C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001R0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163600-ENSG00000116117 CGP 9606 2:203936748-205620162
GeneTranscriptPositionBiotype
ENSG00000163600 (ICOS)
inducible T-cell co-stimulator 		ENST00000316386 (ICOS-001) 203936748-203961577 protein_coding
ENST00000435193 (ICOS-002) 203936780-203961577 protein_coding
ENSG00000223890 (AC008171.1)
 ENST00000395058 (AC008171.1-001) 205253304-205253503 processed_pseudogene
ENSG00000234714 (AC009965.2)
 ENST00000411436 (AC009965.2-001) 204090457-204109849 lincRNA
ENSG00000236634 (AC016903.1)
 ENST00000444017 (AC016903.1-001) 204470076-204473837 lincRNA
ENSG00000236681 (DSTNP5)
destrin (actin depolymerizing factor) pseudogene 5 		ENST00000427921 (DSTNP5-001) 204306842-204307364 processed_pseudogene
ENSG00000237271 (AC009498.1)
 ENST00000419860 (AC009498.1-001) 204228137-204234985 lincRNA
ENSG00000237843 (AC016903.2)
 ENST00000456384 (AC016903.2-001) 204475356-204507672 lincRNA
CIL_0001R0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026009-ENSMUSG00000052062 CGP 10090 1:60977927-62642284
GeneTranscriptPositionBiotype
ENSMUSG00000026009 (Icos)
inducible T cell co-stimulator 		ENSMUST00000027162 (Icos-002) 60977927-60995797 protein_coding
ENSMUST00000102827 (Icos-001) 60977927-61000320 protein_coding
ENSMUSG00000052062 (Pard3b)
par-3 family cell polarity regulator beta 		ENSMUST00000046673 (Pard3b-002) 61639243-62637923 protein_coding
ENSMUST00000075374 (Pard3b-001) 61638824-62642284 protein_coding
ENSMUST00000094906 (Pard3b-003) 61639243-62642284 protein_coding
ENSMUST00000129030 (Pard3b-005) 61638875-61769859 retained_intron
ENSMUST00000138768 (Pard3b-004) 61638824-62078259 processed_transcript
ENSMUST00000188325 (Pard3b-007) 61638886-62169299 retained_intron
ENSMUSG00000080785 (Gm11591)
predicted gene 11591 		ENSMUST00000120063 (Gm11591-001) 61196541-61197242 processed_pseudogene
ENSMUSG00000082804 (Rpl17-ps1)
ribosomal protein L17, pseudogene 1 		ENSMUST00000119156 (Rpl17-ps1-001) 61075674-61076225 processed_pseudogene
ENSMUSG00000085019 (Pard3bos2)
par-3 family cell polarity regulator beta, opposite strand 2 		ENSMUST00000127498 (Pard3bos2-001) 62131195-62136109 antisense
ENSMUSG00000085248 (Gm11587)
predicted gene 11587 		ENSMUST00000128274 (Gm11587-001) 61301909-61307746 lincRNA
ENSMUSG00000085400 (Pard3bos3)
par-3 family cell polarity regulator beta, opposite strand 3 		ENSMUST00000147177 (Pard3bos3-001) 62456725-62499261 antisense
ENSMUSG00000085447 (9530026F06Rik)
RIKEN cDNA 9530026F06 gene 		ENSMUST00000141000 (9530026F06Rik-001) 61378432-61395904 lincRNA
ENSMUSG00000085842 (Pard3bos1)
par-3 family cell polarity regulator beta, opposite strand 1 		ENSMUST00000130699 (Pard3bos1-002) 61786744-61851540 antisense
ENSMUST00000138535 (Pard3bos1-001) 61767415-61851462 antisense
ENSMUSG00000086009 (4930587A21Rik)
RIKEN cDNA 4930587A21 gene 		ENSMUST00000128588 (4930587A21Rik-001) 61616943-61621149 lincRNA
ENSMUSG00000086408 (Gm11588)
predicted gene 11588 		ENSMUST00000141758 (Gm11588-001) 61440101-61469475 lincRNA
ENSMUSG00000100344 (RP23-15E24.3)
predicted gene 29640 		ENSMUST00000187972 (RP23-15E24.3-001) 61980930-61981207 processed_pseudogene
ENSMUSG00000100750 (RP23-20G7.4)
predicted gene 29084 		ENSMUST00000185587 (RP23-20G7.4-001) 62534491-62535942 antisense
ENSMUSG00000100893 (RP23-163J17.4)
predicted gene 28083 		ENSMUST00000186533 (RP23-163J17.4-001) 61265291-61271514 lincRNA
ENSMUSG00000100965 (RP23-280M7.2)
predicted gene 28449 		ENSMUST00000187655 (RP23-280M7.2-001) 61474951-61476028 lincRNA
ENSMUSG00000101509 (RP23-361M22.2)
predicted gene 29641 		ENSMUST00000188955 (RP23-361M22.2-001) 62095081-62095339 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001R0_0001ENSG00000163600ENST00000316386ENST00000435193ENSG00000223890ENST00000395058ENSG00000234714ENST00000411436ENSG00000236634ENST00000444017ENSG00000236681ENST00000427921ENSG00000237271ENST00000419860ENSG00000237843ENST00000456384CIL_0001R0_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001R0_0001ENSG00000163600ENST00000316386ENST00000435193ENSG00000223890ENST00000395058ENSG00000234714ENST00000411436ENSG00000236634ENST00000444017ENSG00000236681ENST00000427921ENSG00000237271ENST00000419860ENSG00000237843ENST00000456384CIL_0001R0_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163600 ENST00000316386 N/A 0.929±0.00 N/A N/A 0.214±0.11 N/A N/A N/A 0.247±0.00 0.470±0.12 N/A 0.089±0.06 0.032±0.00 N/A
ENST00000435193 N/A 0.169±0.00 N/A N/A N/A 0.044±0.00 0.035±0.00 0.091±0.00 0.017±0.00 N/A N/A 0.079±0.04 0.018±0.00 0.115±0.03
ENSG00000223890 ENST00000395058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.903±0.00 0.356±0.00 0.754±0.00
ENSG00000234714 ENST00000411436 N/A 0.126±0.00 N/A 0.043±0.00 N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236634 ENST00000444017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00
ENSG00000236681 ENST00000427921 0.042±0.00 0.021±0.00 N/A N/A N/A 0.018±0.00 N/A 0.020±0.00 N/A 0.018±0.00 N/A N/A N/A N/A
ENSG00000237271 ENST00000419860 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A 0.069±0.00
ENSG00000237843 ENST00000456384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026009 ENSMUST00000027162 N/A N/A N/A 0.051±0.00 N/A 0.111±0.02 0.048±0.00 0.094±0.00 0.178±0.08 N/A N/A 0.139±0.10 0.087±0.00 0.024±0.00
ENSMUST00000102827 0.277±0.04 0.079±0.04 0.077±0.00 0.039±0.02 2.686±0.76 0.148±0.08 0.131±0.03 0.141±0.08 0.317±0.13 0.458±0.18 0.075±0.10 0.090±0.04 0.091±0.03 0.059±0.02
ENSMUSG00000052062 ENSMUST00000046673 0.526±0.00 1.625±0.51 N/A N/A 0.701±0.00 1.550±0.15 0.519±0.00 0.933±0.19 0.185±0.00 1.384±0.22 N/A 1.114±0.15 N/A 0.858±0.45
ENSMUST00000075374 2.098±1.19 0.867±0.17 5.985±0.99 0.792±0.43 0.967±0.28 2.786±0.19 0.764±0.48 1.245±0.50 0.395±0.11 2.664±0.42 0.545±0.19 2.119±0.44 0.498±0.17 0.665±0.14
ENSMUST00000094906 N/A N/A 0.911±0.00 N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.339±0.07 0.897±0.00 0.501±0.00 N/A
ENSMUST00000129030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.862±0.00 N/A N/A
ENSMUST00000138768 N/A 2.905±1.26 N/A N/A 2.325±0.34 3.707±1.23 N/A N/A 0.237±0.05 4.494±0.56 N/A 2.352±0.75 N/A N/A
ENSMUST00000188325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080785 ENSMUST00000120063 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A 0.018±0.00 0.124±0.06
ENSMUSG00000082804 ENSMUST00000119156 0.269±0.07 N/A N/A 0.060±0.02 0.799±0.00 N/A 0.139±0.05 0.117±0.00 0.016±0.01 0.167±0.00 0.121±0.00 0.451±0.00 N/A 0.095±0.01
ENSMUSG00000085019 ENSMUST00000127498 N/A N/A 0.113±0.00 0.080±0.02 N/A 0.119±0.00 0.167±0.00 0.102±0.00 0.020±0.02 N/A N/A 0.049±0.00 N/A 0.137±0.06
ENSMUSG00000085248 ENSMUST00000128274 N/A 0.208±0.13 N/A 0.028±0.00 N/A N/A N/A N/A 0.006±0.00 0.079±0.00 N/A 0.085±0.06 0.010±0.00 N/A
ENSMUSG00000085400 ENSMUST00000147177 0.114±0.02 0.223±0.08 0.171±0.01 0.025±0.01 0.128±0.06 0.133±0.01 N/A 0.132±0.07 0.560±0.25 0.249±0.00 0.059±0.00 0.206±0.12 0.051±0.02 0.039±0.00
ENSMUSG00000085447 ENSMUST00000141000 N/A 0.146±0.04 0.048±0.01 0.065±0.00 N/A N/A N/A 0.066±0.04 0.070±0.05 0.095±0.00 N/A N/A 0.028±0.00 0.038±0.00
ENSMUSG00000085842 ENSMUST00000130699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.735±0.00
ENSMUST00000138535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086009 ENSMUST00000128588 N/A N/A 0.022±0.00 0.021±0.00 N/A N/A N/A N/A 0.010±0.00 N/A N/A 0.039±0.00 0.014±0.00 0.489±0.47
ENSMUSG00000086408 ENSMUST00000141758 N/A 0.152±0.05 0.016±0.00 0.073±0.00 N/A 0.167±0.05 N/A 0.048±0.00 0.010±0.00 N/A N/A 0.064±0.00 N/A N/A
ENSMUSG00000100344 ENSMUST00000187972 N/A N/A N/A N/A 0.568±0.25 N/A N/A N/A 0.064±0.00 N/A N/A 0.358±0.00 0.170±0.03 0.278±0.00
ENSMUSG00000100750 ENSMUST00000185587 16.240±2.54 10.686±0.77 37.346±5.11 23.912±16.22 19.139±5.12 27.697±8.20 10.519±1.41 12.827±1.26 13.206±12.10 21.051±2.61 4.421±0.46 11.172±3.58 40.719±27.63 7.794±3.83
ENSMUSG00000100893 ENSMUST00000186533 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100965 ENSMUST00000187655 N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 N/A N/A
ENSMUSG00000101509 ENSMUST00000188955 0.719±0.08 N/A N/A 0.107±0.00 N/A 1.332±0.00 N/A 0.428±0.00 0.609±0.00 N/A N/A N/A 0.101±0.00 0.419±0.10

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