C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 6-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406861 SPATA6L-010 ENSG00000106686 9606 - 9:4600611-4666449 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungOvaryTestisENST00000406861
Transcript ID Brain Kidney Lung Ovary Testis
ENST00000406861 0.571±0.00 0.967±0.00 0.599±0.00 1.024±0.00 2.390±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NI CIL_0000NI_0001 CGP 9:3824127-4587469
CIL_0000NJ CIL_0000NJ_0001 CGP 9:4490444-4666674
CIL_0000NK CIL_0000NK_0001 CGP 9:4553386-4666674

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162110 4430402I18Rik-003 protein_coding Mus_musculus 0 516
ENSMUST00000025872 4430402I18Rik-001 protein_coding Mus_musculus 0 427
ENSMUST00000164777 4430402I18Rik-006 protein_coding Mus_musculus 0 285
ENSMUST00000175647 4430402I18Rik-002 nonsense_mediated_decay Mus_musculus 0 285
ENSMUST00000160542 4430402I18Rik-007 protein_coding Mus_musculus 0 252
ENSMUST00000159655 4430402I18Rik-004 processed_transcript Mus_musculus 2e-28 132

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