C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407940 RP11-69L16.5-001 ENSG00000220472 9606 - 6:7338839-7339568 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407940
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407940 0.138±0.00 0.394±0.00 0.080±0.00 0.311±0.00 0.117±0.00 0.068±0.00 0.152±0.00 0.023±0.00 0.149±0.00 0.216±0.00 0.495±0.23 0.227±0.15 0.270±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0001 VISTA 6:6863717-7465821
CIL_0003S7 CIL_0003S7_0001 CGP 6:7107597-7347446
CIL_0007T6 CIL_0007T6_0001 VISTA 6:7260927-7862502
CIL_00004W CIL_00004W_0001 CGP 6:7268306-7389743
CIL_00004Q CIL_00004Q_0001 CGP 6:7326656-7418037

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032998 Rps3-001 protein_coding Mus_musculus 0 813
ENSMUST00000107096 Rps3-003 protein_coding Mus_musculus 0 551
ENSMUST00000128174 Rps3-004 retained_intron Mus_musculus 0 385
ENSMUST00000128725 Rps3-002 retained_intron Mus_musculus 0 372

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