C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome c, somatic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409409 CYCS-002 ENSG00000172115 9606 - 7:25123307-25125249 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000409409
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000409409 13.504±0.00 15.891±0.00 7.431±0.00 16.207±0.00 16.532±3.63 44.264±0.00 32.541±0.00 7.271±0.00 10.156±0.00 3.493±0.00 17.680±0.00 16.939±5.47 7.898±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CR CIL_0002CR_0001 CGP 7:24796539-25125361
CIL_00099B CIL_00099B_0001 VISTA 7:25093990-25695067
CIL_00094X CIL_00094X_0001 VISTA 7:25107732-25710366
CIL_0002CQ CIL_0002CQ_0001 CGP 7:25120091-25180356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 TAS protein phosphatase type 2A complex
GO:0004722 TAS protein serine/threonine phosphatase activity
GO:0005506 IEA iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA:IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005758 TAS mitochondrial intermembrane space
GO:0005829 IMP cytosol
GO:0006309 IMP apoptotic DNA fragmentation
GO:0006915 TAS apoptotic process
GO:0008635 TAS activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c
GO:0009055 IEA electron carrier activity
GO:0016311 TAS dephosphorylation
GO:0020037 IEA:TAS heme binding
GO:0022904 TAS respiratory electron transport chain
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045155 IDA electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity
GO:0045333 TAS cellular respiration
GO:0055114 IEA oxidation-reduction process
GO:0070469 IEA respiratory chain
GO:0097193 TAS intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161401 Cycs-001 protein_coding Mus_musculus 0 568
ENSMUST00000073080 Gm10053-201 protein_coding Mus_musculus 0 562
ENSMUST00000077766 Cycs-002 retained_intron Mus_musculus 0 435
ENSMUST00000078246 Gm10108-201 protein_coding Mus_musculus 0 411
ENSMUST00000118431 Gm13772-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000119355 Gm13252-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000120227 Gm14238-001 processed_pseudogene Mus_musculus 0 281

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