C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 10053
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073080 Gm10053-201 ENSMUSG00000058927 10090 + 19:24875686-24876634 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverMusclePlacentaENSMUST00000073080
Transcript ID Adipose Bladder Brain Breast Heart Liver Muscle Placenta
ENSMUST00000073080 0.051±0.00 4.889±4.87 3.582±3.57 0.157±0.00 0.066±0.01 4.892±6.75 0.439±0.16 0.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AF CIL_0009AF_0002 VISTA 19:24645396-25246544

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002931 IEA response to ischemia
GO:0005506 IEA iron ion binding
GO:0005739 IEA mitochondrion
GO:0005829 IEA cytosol
GO:0006123 IEA mitochondrial electron transport, cytochrome c to oxygen
GO:0006915 IEA apoptotic process
GO:0006979 IEA response to oxidative stress
GO:0009055 IEA electron carrier activity
GO:0010730 IEA negative regulation of hydrogen peroxide biosynthetic process
GO:0020037 IEA heme binding
GO:0034349 IEA glial cell apoptotic process
GO:0055114 IEA oxidation-reduction process
GO:0070469 IEA respiratory chain
GO:1901857 IEA positive regulation of cellular respiration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261523 RORA-003 protein_coding Homo_sapiens 1e-20 106
ENST00000305786 CYCS-001 protein_coding Homo_sapiens 0 580
ENST00000399027 CYCSP55-001 processed_pseudogene Homo_sapiens 0 368
ENST00000402289 CYCSP45-001 processed_pseudogene Homo_sapiens 0 388
ENST00000409409 CYCS-002 protein_coding Homo_sapiens 0 562
ENST00000409764 CYCS-003 protein_coding Homo_sapiens 0 514
ENST00000411715 CYCSP19-001 processed_pseudogene Homo_sapiens 0 374
ENST00000413447 CYCS-004 protein_coding Homo_sapiens 0 409
ENST00000414485 CYCSP33-001 processed_pseudogene Homo_sapiens 0 344
ENST00000415043 CYCSP5-001 processed_pseudogene Homo_sapiens 0 213
ENST00000417124 CYCSP48-001 processed_pseudogene Homo_sapiens 0 276
ENST00000417973 CYCSP10-001 processed_pseudogene Homo_sapiens 0 348
ENST00000420810 CYCSP49-001 processed_pseudogene Homo_sapiens 0 300
ENST00000422857 CYCSP52-001 processed_pseudogene Homo_sapiens 0 368
ENST00000434498 CYCSP6-001 processed_pseudogene Homo_sapiens 0 324
ENST00000436426 CYCSP11-001 processed_pseudogene Homo_sapiens 0 407
ENST00000437729 CYCSP12-001 processed_pseudogene Homo_sapiens 0 289
ENST00000440548 CYCSP32-001 processed_pseudogene Homo_sapiens 0 374
ENST00000443545 CYCSP51-001 processed_pseudogene Homo_sapiens 0 422
ENST00000445119 CYCSP24-001 processed_pseudogene Homo_sapiens 0 409
ENST00000450823 CYCSP42-001 processed_pseudogene Homo_sapiens 6e-34 147
ENST00000451978 CYCSP35-001 processed_pseudogene Homo_sapiens 0 243
ENST00000458172 CYCSP34-001 processed_pseudogene Homo_sapiens 0 377
ENST00000473154 CYCSP20-001 processed_pseudogene Homo_sapiens 0 307
ENST00000517555 CYCSP22-001 processed_pseudogene Homo_sapiens 0 414
ENST00000523393 RP1-273G13.2-001 processed_pseudogene Homo_sapiens 0 383
ENST00000525280 CYCSP25-001 processed_pseudogene Homo_sapiens 0 405
ENST00000527643 CYCSP27-001 processed_pseudogene Homo_sapiens 0 233
ENST00000533731 CYCSP29-001 processed_pseudogene Homo_sapiens 0 344
ENST00000559840 CYCSP38-001 transcribed_processed_pseudogene Homo_sapiens 0 230
ENST00000565821 CYCSP39-001 processed_pseudogene Homo_sapiens 0 379
ENST00000581473 RP11-758G22.1-001 processed_pseudogene Homo_sapiens 0 259
ENST00000604815 CYCSP1-001 processed_pseudogene Homo_sapiens 0 407
ENST00000616920 AL078471.4-001 processed_pseudogene Homo_sapiens 0 189

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