C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome c, somatic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161401 Cycs-001 ENSMUSG00000063694 10090 - 6:50562563-50566538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161401 7.465±1.09 0.900±0.28 13.268±1.48 10.714±3.72 6.027±1.02 6.168±1.29 28.155±10.85 13.895±2.15 11.339±6.91 3.584±0.63 51.832±6.11 1.950±2.12 10.886±8.14 2.520±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CR CIL_0002CR_0002 CGP 6:50293330-50566538
CIL_00099B CIL_00099B_0002 VISTA 6:50510700-51111821
CIL_00094X CIL_00094X_0002 VISTA 6:50521119-51123589
CIL_0002CQ CIL_0002CQ_0002 CGP 6:50562563-50596632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002931 IEA response to ischemia
GO:0005506 IEA iron ion binding
GO:0005739 IEA mitochondrion
GO:0005829 IEA cytosol
GO:0006123 IEA mitochondrial electron transport, cytochrome c to oxygen
GO:0006915 IEA apoptotic process
GO:0006979 IEA response to oxidative stress
GO:0009055 IEA electron carrier activity
GO:0010730 IEA negative regulation of hydrogen peroxide biosynthetic process
GO:0020037 IEA heme binding
GO:0034349 IEA glial cell apoptotic process
GO:0055114 IEA oxidation-reduction process
GO:0070469 IEA respiratory chain
GO:1901857 IEA positive regulation of cellular respiration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261523 RORA-003 protein_coding Homo_sapiens 1e-20 106
ENST00000305786 CYCS-001 protein_coding Homo_sapiens 0 628
ENST00000399027 CYCSP55-001 processed_pseudogene Homo_sapiens 0 368
ENST00000402289 CYCSP45-001 processed_pseudogene Homo_sapiens 0 388
ENST00000409409 CYCS-002 protein_coding Homo_sapiens 0 568
ENST00000409764 CYCS-003 protein_coding Homo_sapiens 0 520
ENST00000411715 CYCSP19-001 processed_pseudogene Homo_sapiens 0 374
ENST00000413447 CYCS-004 protein_coding Homo_sapiens 0 409
ENST00000414485 CYCSP33-001 processed_pseudogene Homo_sapiens 0 344
ENST00000415043 CYCSP5-001 processed_pseudogene Homo_sapiens 0 213
ENST00000417124 CYCSP48-001 processed_pseudogene Homo_sapiens 0 276
ENST00000417973 CYCSP10-001 processed_pseudogene Homo_sapiens 0 348
ENST00000420810 CYCSP49-001 processed_pseudogene Homo_sapiens 0 300
ENST00000422857 CYCSP52-001 processed_pseudogene Homo_sapiens 0 368
ENST00000434498 CYCSP6-001 processed_pseudogene Homo_sapiens 0 324
ENST00000436426 CYCSP11-001 processed_pseudogene Homo_sapiens 0 407
ENST00000437729 CYCSP12-001 processed_pseudogene Homo_sapiens 0 289
ENST00000440548 CYCSP32-001 processed_pseudogene Homo_sapiens 0 374
ENST00000443545 CYCSP51-001 processed_pseudogene Homo_sapiens 0 422
ENST00000445119 CYCSP24-001 processed_pseudogene Homo_sapiens 0 409
ENST00000450823 CYCSP42-001 processed_pseudogene Homo_sapiens 6e-34 147
ENST00000451978 CYCSP35-001 processed_pseudogene Homo_sapiens 0 243
ENST00000458172 CYCSP34-001 processed_pseudogene Homo_sapiens 0 377
ENST00000473154 CYCSP20-001 processed_pseudogene Homo_sapiens 0 307
ENST00000517555 CYCSP22-001 processed_pseudogene Homo_sapiens 0 414
ENST00000523393 RP1-273G13.2-001 processed_pseudogene Homo_sapiens 0 383
ENST00000525280 CYCSP25-001 processed_pseudogene Homo_sapiens 0 405
ENST00000527643 CYCSP27-001 processed_pseudogene Homo_sapiens 0 233
ENST00000533731 CYCSP29-001 processed_pseudogene Homo_sapiens 0 344
ENST00000559840 CYCSP38-001 transcribed_processed_pseudogene Homo_sapiens 0 230
ENST00000565821 CYCSP39-001 processed_pseudogene Homo_sapiens 0 379
ENST00000581473 RP11-758G22.1-001 processed_pseudogene Homo_sapiens 0 259
ENST00000604815 CYCSP1-001 processed_pseudogene Homo_sapiens 0 407
ENST00000616920 AL078471.4-001 processed_pseudogene Homo_sapiens 0 189

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