C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: galactose-3-O-sulfotransferase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411994 GAL3ST4-004 ENSG00000197093 9606 - 7:100159816-100167230 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungMuscleOvaryTestisENST00000411994
Transcript ID Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000411994 1.371±0.00 0.060±0.00 0.913±0.00 0.119±0.05 0.768±0.00 0.132±0.00 2.538±1.81 0.649±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005BN CIL_0005BN_0002 CGP 7:100154420-100168750
CIL_0005CG CIL_0005CG_0001 CGP 7:100159244-100177372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001733 IEA galactosylceramide sulfotransferase activity
GO:0005794 IEA Golgi apparatus
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162557 Gal3st4-004 processed_transcript Mus_musculus 0 909
ENSMUST00000159067 Gpc2-007 nonsense_mediated_decay Mus_musculus 0 697
ENSMUST00000161279 Gal3st4-001 protein_coding Mus_musculus 0 697
ENSMUST00000100530 Gal3st4-003 protein_coding Mus_musculus 0 697
ENSMUST00000161647 Gal3st4-002 protein_coding Mus_musculus 0 697
ENSMUST00000161665 Gal3st4-005 protein_coding Mus_musculus 0 217

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