C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | glypican 2 (cerebroglycan) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000159067  |
Gpc2-007 |
ENSMUSG00000029510 |
10090 | - |
5:138264952-138279958  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008QI | CIL_0008QI_0002 | VISTA | 5:137705744-138314172 |
| CIL_0005BN | CIL_0005BN_0003 | CGP | 5:138259658-138272840 |
| CIL_0005CG | CIL_0005CG_0002 | CGP | 5:138264921-138280005 |
| CIL_0005CH | CIL_0005CH_0002 | CGP | 5:138264952-138312393 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005578 | IEA | proteinaceous extracellular matrix |
| GO:0005886 | IEA | plasma membrane |
| GO:0031225 | IEA | anchored component of membrane |
| GO:0043395 | IEA | heparan sulfate proteoglycan binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000292377
|
GPC2-001 | protein_coding | Homo_sapiens | 0 | 854 |
|
ENST00000360039
|
GAL3ST4-001 | protein_coding | Homo_sapiens | 0 | 1238 |
|
ENST00000411994
|
GAL3ST4-004 | protein_coding | Homo_sapiens | 0 | 697 |
|
ENST00000413800
|
GAL3ST4-003 | protein_coding | Homo_sapiens | 0 | 1238 |
|
ENST00000423751
|
GAL3ST4-002 | protein_coding | Homo_sapiens | 0 | 697 |
|
ENST00000460995
|
GAL3ST4-006 | processed_transcript | Homo_sapiens | 0 | 481 |
|
ENST00000471050
|
GPC2-003 | processed_transcript | Homo_sapiens | 0 | 652 |
|
ENST00000471717
|
GPC2-002 | retained_intron | Homo_sapiens | 0 | 854 |
|
ENST00000480087
|
GPC2-005 | processed_transcript | Homo_sapiens | 0 | 442 |
|
ENST00000482469
|
GAL3ST4-007 | processed_transcript | Homo_sapiens | 0 | 514 |
|
ENST00000482569
|
GPC2-009 | processed_transcript | Homo_sapiens | 0 | 422 |
|
ENST00000490629
|
GPC2-007 | retained_intron | Homo_sapiens | 0 | 311 |
|
ENST00000495882
|
GAL3ST4-005 | retained_intron | Homo_sapiens | 0 | 1288 |
|
ENST00000498000
|
GAL3ST4-008 | processed_transcript | Homo_sapiens | 0 | 292 |
