C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005CG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197093-ENSG00000213420 CGP 9606 7:100159244-100177372
GeneTranscriptPositionBiotype
ENSG00000197093 (GAL3ST4)
galactose-3-O-sulfotransferase 4 		ENST00000360039 (GAL3ST4-001) 100159245-100168750 protein_coding
ENST00000411994 (GAL3ST4-004) 100159816-100167230 protein_coding
ENST00000413800 (GAL3ST4-003) 100159244-100167284 protein_coding
ENST00000423751 (GAL3ST4-002) 100159646-100168613 protein_coding
ENST00000460995 (GAL3ST4-006) 100166599-100168135 processed_transcript
ENST00000482469 (GAL3ST4-007) 100166533-100168069 processed_transcript
ENST00000495882 (GAL3ST4-005) 100159244-100168112 retained_intron
ENST00000498000 (GAL3ST4-008) 100160729-100168142 processed_transcript
ENSG00000213420 (GPC2)
glypican 2 		ENST00000292377 (GPC2-001) 100169606-100177367 protein_coding
ENST00000471050 (GPC2-003) 100169629-100174724 processed_transcript
ENST00000471717 (GPC2-002) 100173458-100177372 retained_intron
ENST00000480087 (GPC2-005) 100172190-100177369 processed_transcript
ENST00000482569 (GPC2-009) 100176229-100177369 processed_transcript
ENST00000486702 (GPC2-008) 100171069-100172218 retained_intron
ENST00000490629 (GPC2-007) 100171651-100175785 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0005CG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075593-ENSMUSG00000029510 CGP 10090 5:138264921-138280005
GeneTranscriptPositionBiotype
ENSMUSG00000029510 (Gpc2)
glypican 2 (cerebroglycan) 		ENSMUST00000014089 (Gpc2-004) 138273660-138279965 protein_coding
ENSMUST00000159067 (Gpc2-007) 138264952-138279958 nonsense_mediated_decay
ENSMUST00000159350 (Gpc2-008) 138276641-138279963 processed_transcript
ENSMUST00000159689 (Gpc2-005) 138273657-138279962 retained_intron
ENSMUST00000161055 (Gpc2-006) 138275528-138278237 retained_intron
ENSMUST00000161827 (Gpc2-001) 138273655-138280005 protein_coding
ENSMUST00000161984 (Gpc2-002) 138273657-138279982 nonsense_mediated_decay
ENSMUST00000162909 (Gpc2-003) 138273657-138279985 retained_intron
ENSMUSG00000075593 (Gal3st4)
galactose-3-O-sulfotransferase 4 		ENSMUST00000100530 (Gal3st4-003) 138264925-138272754 protein_coding
ENSMUST00000161279 (Gal3st4-001) 138264938-138272801 protein_coding
ENSMUST00000161647 (Gal3st4-002) 138264921-138272840 protein_coding
ENSMUST00000161665 (Gal3st4-005) 138270993-138272749 protein_coding
ENSMUST00000162557 (Gal3st4-004) 138264938-138272801 processed_transcript
ENSMUSG00000085227 (6330418K02Rik)
RIKEN cDNA 6330418K02 gene 		ENSMUST00000124298 (6330418K02Rik-001) 138264043-138266661 processed_transcript
ENSMUST00000125662 (6330418K02Rik-002) 138264069-138266661 processed_transcript
ENSMUST00000138911 (6330418K02Rik-005) 138265544-138266083 processed_transcript
ENSMUST00000141454 (6330418K02Rik-003) 138264054-138266332 processed_transcript
ENSMUST00000144460 (6330418K02Rik-004) 138264108-138266229 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CG_0001ENSG00000197093ENST00000360039ENST00000411994ENST00000413800ENST00000423751ENST00000460995ENST00000482469ENST00000495882ENST00000498000ENSG00000213420ENST00000292377ENST00000471050ENST00000471717ENST00000480087ENST00000482569ENST00000486702ENST00000490629CIL_0005CG_0002ENSMUSG00000029510ENSMUST00000014089ENSMUST00000159067ENSMUST00000159350ENSMUST00000159689ENSMUST00000161055ENSMUST00000161827ENSMUST00000161984ENSMUST00000162909ENSMUSG00000075593ENSMUST00000100530ENSMUST00000161279ENSMUST00000161647ENSMUST00000161665ENSMUST00000162557ENSMUSG00000085227ENSMUST00000124298ENSMUST00000125662ENSMUST00000138911ENSMUST00000141454ENSMUST00000144460
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CG_0001ENSG00000197093ENST00000360039ENST00000411994ENST00000413800ENST00000423751ENST00000460995ENST00000495882ENST00000498000ENSG00000213420ENST00000292377ENST00000471050ENST00000471717ENST00000480087ENST00000482569ENST00000490629CIL_0005CG_0002ENSMUSG00000029510ENSMUST00000014089ENSMUST00000159689ENSMUST00000161055ENSMUST00000161827ENSMUST00000162909ENSMUSG00000075593ENSMUST00000100530ENSMUST00000161647ENSMUST00000162557ENSMUSG00000085227ENSMUST00000124298
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000197093 ENST00000360039 1.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.376±0.00 3.039±0.00 0.904±0.00 1.522±0.00
ENST00000411994 N/A N/A N/A N/A 1.371±0.00 N/A 0.060±0.00 0.913±0.00 0.119±0.05 0.768±0.00 0.132±0.00 2.538±1.81 N/A 0.649±0.00
ENST00000413800 0.963±0.00 1.220±0.00 N/A 0.622±0.00 1.249±0.68 1.841±0.00 0.379±0.00 0.273±0.00 N/A 0.896±0.00 N/A 2.911±1.31 3.479±1.22 0.765±0.00
ENST00000423751 N/A N/A N/A 0.360±0.00 0.306±0.00 0.802±0.00 0.215±0.00 N/A 0.332±0.25 N/A N/A 2.342±0.44 2.056±0.00 N/A
ENST00000460995 N/A N/A 1.927±0.00 0.612±0.00 N/A 1.145±0.00 N/A N/A 0.876±0.00 N/A N/A N/A N/A N/A
ENST00000482469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495882 N/A 0.262±0.00 N/A N/A N/A N/A 0.069±0.00 0.110±0.00 N/A 0.143±0.07 0.085±0.00 0.787±0.00 N/A 0.813±0.00
ENST00000498000 N/A N/A N/A 0.992±0.00 N/A N/A N/A N/A N/A 1.646±0.00 N/A N/A N/A N/A
ENSG00000213420 ENST00000292377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.374±0.13 N/A 6.185±3.50
ENST00000471050 0.220±0.00 N/A N/A 0.904±0.00 N/A 0.132±0.00 0.062±0.00 0.196±0.00 N/A 0.244±0.00 0.056±0.00 0.656±0.00 0.110±0.08 0.722±0.00
ENST00000471717 N/A 0.858±0.00 N/A N/A 0.372±0.00 0.836±0.00 N/A 0.188±0.00 N/A 0.087±0.00 N/A 0.066±0.00 0.016±0.00 N/A
ENST00000480087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.617±0.06 0.251±0.00 N/A
ENST00000482569 N/A N/A N/A N/A 1.345±0.00 0.377±0.00 N/A N/A N/A N/A N/A 0.921±0.00 N/A N/A
ENST00000486702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490629 N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029510 ENSMUST00000014089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.840±0.00 N/A
ENSMUST00000159067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.823±0.14 N/A
ENSMUST00000161055 N/A N/A N/A 110.833±18.90 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161827 N/A N/A 4.777±0.00 148.545±18.06 N/A N/A N/A N/A N/A N/A N/A N/A 3.616±0.63 6.005±2.78
ENSMUST00000161984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162909 5.449±0.09 N/A 4.921±1.48 49.504±9.64 N/A N/A N/A N/A N/A N/A N/A 3.176±0.59 2.131±0.56 0.382±0.00
ENSMUSG00000075593 ENSMUST00000100530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A
ENSMUST00000161279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.537±0.00 N/A N/A N/A
ENSMUST00000161665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162557 N/A N/A N/A 2.963±0.00 N/A N/A N/A N/A N/A N/A 0.743±0.00 N/A 3.008±0.00 1.303±0.00
ENSMUSG00000085227 ENSMUST00000124298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.051±0.00 N/A
ENSMUST00000125662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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