C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATR interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412052 ATRIP-005 ENSG00000164053 9606 + 3:48447093-48465716 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungENST00000412052
Transcript ID Brain Liver Lung
ENST00000412052 0.145±0.00 0.249±0.00 0.116±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0001 VISTA 3:47843366-48458182
CIL_0002UL CIL_0002UL_0001 CGP 3:48446710-48467645

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 TAS DNA damage checkpoint
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006260 TAS DNA replication
GO:0006281 IEA DNA repair
GO:0015630 IDA microtubule cytoskeleton
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160928 Atrip-002 nonsense_mediated_decay Mus_musculus 0 1797
ENSMUST00000045011 Atrip-001 protein_coding Mus_musculus 0 1796
ENSMUST00000161521 Atrip-004 protein_coding Mus_musculus 0 1380
ENSMUST00000160217 Atrip-003 nonsense_mediated_decay Mus_musculus 0 1107

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