C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core-binding factor, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412916 CBFB-003 ENSG00000067955 9606 + 16:67029245-67101022 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412916
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412916 12.429±0.00 4.185±0.00 1.494±0.00 4.557±3.94 8.241±0.00 2.788±2.15 3.388±2.87 1.224±0.29 2.650±0.05 17.337±0.00 3.665±0.74 2.555±1.36 2.439±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0001 VISTA 16:66603173-67205657
CIL_0005T3 CIL_0005T3_0001 CGP 16:66988589-67101058
CIL_0005T2 CIL_0005T2_0001 CGP 16:67029116-67148539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001649 IEA osteoblast differentiation
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0016020 IDA membrane
GO:0030098 IEA lymphocyte differentiation
GO:0030099 IEA myeloid cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048469 IEA cell maturation
GO:0060216 IEA definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052209 Cbfb-001 protein_coding Mus_musculus 0 1345
ENSMUST00000109392 Cbfb-003 protein_coding Mus_musculus 0 955
ENSMUST00000109394 Cbfb-004 protein_coding Mus_musculus 0 833
ENSMUST00000109395 Cbfb-002 protein_coding Mus_musculus 0 833
ENSMUST00000186070 Cbfb-006 retained_intron Mus_musculus 0 326
ENSMUST00000190915 Cbfb-007 processed_transcript Mus_musculus 0 311
ENSMUST00000187323 Cbfb-008 processed_transcript Mus_musculus 0 285

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