C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413346 RP11-423F24.3-001 ENSG00000227934 9606 + 1:231021611-231022183 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonMuscleOvaryPlacentaTestisENST00000413346
Transcript ID Adrenal Brain Breast Colon Muscle Ovary Placenta Testis
ENST00000413346 0.030±0.00 0.187±0.00 0.278±0.00 0.212±0.00 0.026±0.00 0.175±0.04 0.426±0.21 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WK CIL_0007WK_0001 VISTA 1:230548777-231152235
CIL_000618 CIL_000618_0001 CGP 1:230978981-231040246
CIL_000619 CIL_000619_0001 CGP 1:231018958-231221556

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182047 Rnf4-006 protein_coding Mus_musculus 0 628
ENSMUST00000030992 Rnf4-001 protein_coding Mus_musculus 0 628
ENSMUST00000182709 Rnf4-002 protein_coding Mus_musculus 0 628
ENSMUST00000182970 Rnf4-004 retained_intron Mus_musculus 0 387
ENSMUST00000181991 Rnf4-011 processed_transcript Mus_musculus 0 374
ENSMUST00000182583 Rnf4-005 protein_coding Mus_musculus 0 372
ENSMUST00000183071 Rnf4-012 retained_intron Mus_musculus 0 261
ENSMUST00000183265 Rnf4-003 retained_intron Mus_musculus 0 204

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