C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413663 RP11-353H3.1-001 ENSG00000223916 9606 - 3:43484972-43485880 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleTestisENST00000413663
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Testis
ENST00000413663 0.325±0.00 0.248±0.00 0.289±0.00 0.161±0.00 0.834±0.00 0.053±0.00 0.089±0.00 0.287±0.00 0.209±0.05 0.230±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F1 CIL_0003F1_0001 CGP 3:43286512-43691594
CIL_0003EU CIL_0003EU_0001 CGP 3:43354859-43734371

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 401
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000080062 Gm17541-201 protein_coding Mus_musculus 0 331
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 230
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 191
ENSMUST00000172625 Gm18128-001 processed_pseudogene Mus_musculus 2e-36 156

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