C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054220 Rpl18a-201 ENSMUSG00000045128 10090 - 8:70894722-70897443 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054220 78.290±50.63 425.760±54.98 411.910±0.00 81.261±43.87 474.072±277.56 559.140±209.00 99.543±15.72 207.812±97.88 220.917±37.06 272.411±113.99 127.885±29.06 559.183±267.88 170.020±84.02 91.653±45.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 435
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 302
ENST00000222247 RPL18A-001 protein_coding Homo_sapiens 0 688
ENST00000391389 RP11-134K1.2-001 processed_pseudogene Homo_sapiens 0 571
ENST00000401937 RP4-803A2.1-001 processed_pseudogene Homo_sapiens 0 436
ENST00000413663 RP11-353H3.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000424057 RPL18AP16-001 processed_pseudogene Homo_sapiens 0 542
ENST00000430258 RPL18AP15-001 processed_pseudogene Homo_sapiens 0 481
ENST00000455430 AC004692.5-001 processed_pseudogene Homo_sapiens 0.00000001 64
ENST00000456046 AC079250.1-001 processed_pseudogene Homo_sapiens 0 610
ENST00000457038 RP11-40H20.5-001 processed_pseudogene Homo_sapiens 0 503
ENST00000462885 RPL18AP3-001 processed_pseudogene Homo_sapiens 0 643
ENST00000469219 RP11-85G20.1-001 processed_pseudogene Homo_sapiens 0 475
ENST00000597648 RPL18A-007 protein_coding Homo_sapiens 0 588
ENST00000599870 RPL18A-005 protein_coding Homo_sapiens 0 623
ENST00000599898 RPL18A-008 protein_coding Homo_sapiens 0 488
ENST00000600147 RPL18A-002 protein_coding Homo_sapiens 0.000000000000009 86

Loading