C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000030215 rpl18a-001 ENSDARG00000025073 7955 + 4:101572-108726 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000030215
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000030215 48.593±57.62 180.059±176.98 24.784±27.41 194.929±0.00 240.292±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 435
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000161190 Rpl18a-ps1-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000178437 Gm9002-001 processed_pseudogene Mus_musculus 6e-37 158
ENST00000222247 RPL18A-001 protein_coding Homo_sapiens 0 401
ENST00000401937 RP4-803A2.1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000413663 RP11-353H3.1-001 processed_pseudogene Homo_sapiens 0 230
ENST00000424057 RPL18AP16-001 processed_pseudogene Homo_sapiens 0 364
ENST00000456046 AC079250.1-001 processed_pseudogene Homo_sapiens 0 375
ENST00000457038 RP11-40H20.5-001 processed_pseudogene Homo_sapiens 0 339
ENST00000462885 RPL18AP3-001 processed_pseudogene Homo_sapiens 0 392
ENST00000469219 RP11-85G20.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000597648 RPL18A-007 protein_coding Homo_sapiens 0 379
ENST00000599870 RPL18A-005 protein_coding Homo_sapiens 0 392
ENST00000599898 RPL18A-008 protein_coding Homo_sapiens 0 344

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