C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121555 Rpl18-ps1-001 ENSMUSG00000081382 10090 + 1:60900898-60901422 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121555 0.278±0.16 5.171±3.20 4.420±0.34 0.630±0.37 0.680±0.57 0.399±0.20 0.303±0.08 0.474±0.16 0.950±1.12 0.385±0.15 0.148±0.02 0.718±0.48 0.259±0.23 0.201±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000398 CIL_000398_0002 CGP 1:60716800-60915832
CIL_00039C CIL_00039C_0002 CGP 1:60887000-61000320

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 433
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 298
ENST00000222247 RPL18A-001 protein_coding Homo_sapiens 0 627
ENST00000401937 RP4-803A2.1-001 processed_pseudogene Homo_sapiens 0 414
ENST00000413663 RP11-353H3.1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000424057 RPL18AP16-001 processed_pseudogene Homo_sapiens 0 521
ENST00000430258 RPL18AP15-001 processed_pseudogene Homo_sapiens 0 442
ENST00000455430 AC004692.5-001 processed_pseudogene Homo_sapiens 0.0000006 58
ENST00000456046 AC079250.1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000457038 RP11-40H20.5-001 processed_pseudogene Homo_sapiens 0 475
ENST00000462885 RPL18AP3-001 processed_pseudogene Homo_sapiens 0 621
ENST00000469219 RP11-85G20.1-001 processed_pseudogene Homo_sapiens 0 448
ENST00000597648 RPL18A-007 protein_coding Homo_sapiens 0 571
ENST00000599870 RPL18A-005 protein_coding Homo_sapiens 0 595
ENST00000599898 RPL18A-008 protein_coding Homo_sapiens 0 460
ENST00000600147 RPL18A-002 protein_coding Homo_sapiens 0.00000000002 75

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