C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000148933 rpl18a-002 ENSDARG00000025073 7955 + 4:101651-108199 nonsense_mediated_decay

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000148933
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000148933 79.740±0.00 1558.950±0.00 52.677±0.00 473.886±0.00 393.630±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 302
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000161190 Rpl18a-ps1-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000178437 Gm9002-001 processed_pseudogene Mus_musculus 3e-30 135
ENST00000222247 RPL18A-001 protein_coding Homo_sapiens 0 313
ENST00000401937 RP4-803A2.1-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000413663 RP11-353H3.1-001 processed_pseudogene Homo_sapiens 0 191
ENST00000424057 RPL18AP16-001 processed_pseudogene Homo_sapiens 0 287
ENST00000456046 AC079250.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000457038 RP11-40H20.5-001 processed_pseudogene Homo_sapiens 0 259
ENST00000462885 RPL18AP3-001 processed_pseudogene Homo_sapiens 0 307
ENST00000469219 RP11-85G20.1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000597648 RPL18A-007 protein_coding Homo_sapiens 0 300
ENST00000599870 RPL18A-005 protein_coding Homo_sapiens 0 313
ENST00000599898 RPL18A-008 protein_coding Homo_sapiens 0 313

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