C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: galactose-3-O-sulfotransferase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413800 GAL3ST4-003 ENSG00000197093 9606 - 7:100159244-100167284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000413800
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000413800 0.963±0.00 1.220±0.00 0.622±0.00 1.249±0.68 1.841±0.00 0.379±0.00 0.273±0.00 0.896±0.00 2.911±1.31 3.479±1.22 0.765±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005BN CIL_0005BN_0002 CGP 7:100154420-100168750
CIL_0005CG CIL_0005CG_0001 CGP 7:100159244-100177372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001733 IEA galactosylceramide sulfotransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006790 NAS sulfur compound metabolic process
GO:0007267 NAS cell-cell signaling
GO:0009058 IEA biosynthetic process
GO:0009100 NAS glycoprotein metabolic process
GO:0009311 NAS oligosaccharide metabolic process
GO:0016020 IDA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0030166 NAS proteoglycan biosynthetic process
GO:0050656 NAS 3'-phosphoadenosine 5'-phosphosulfate binding
GO:0050694 IDA galactose 3-O-sulfotransferase activity
GO:0050698 NAS proteoglycan sulfotransferase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159067 Gpc2-007 nonsense_mediated_decay Mus_musculus 0 1238
ENSMUST00000161279 Gal3st4-001 protein_coding Mus_musculus 0 1238
ENSMUST00000100530 Gal3st4-003 protein_coding Mus_musculus 0 1238
ENSMUST00000161647 Gal3st4-002 protein_coding Mus_musculus 0 1057
ENSMUST00000162557 Gal3st4-004 processed_transcript Mus_musculus 0 697
ENSMUST00000161665 Gal3st4-005 protein_coding Mus_musculus 0 333

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