C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ssu-2 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415132 SSUH2-008 ENSG00000125046 9606 - 3:8619611-8658966 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLiverLungOvaryTestisENST00000415132
Transcript ID Adrenal Breast Heart Liver Lung Ovary Testis
ENST00000415132 0.192±0.00 0.100±0.06 0.106±0.00 0.024±0.00 0.039±0.00 0.069±0.00 2.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000001 CIL_000001_0001 CGP 3:8501707-8745040
CIL_0005S5 CIL_0005S5_0001 CGP 3:8619400-8841808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0031072 IEA heat shock protein binding
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123254 Ssu2-003 retained_intron Mus_musculus 0 196
ENSMUST00000143134 Ssu2-002 processed_transcript Mus_musculus 0 196
ENSMUST00000060847 Ssu2-001 protein_coding Mus_musculus 5e-28 130

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