C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp3 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416195 SP3-002 ENSG00000172845 9606 - 2:173908530-173964553 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000416195
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000416195 5.266±0.00 4.049±0.00 3.600±0.04 11.879±3.79 4.397±0.26 2.134±1.12 4.495±0.13 1.977±0.00 8.030±1.19 5.643±1.91 8.415±0.76 5.398±0.36 11.377±5.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0004JD CIL_0004JD_0001 CGP 2:173354820-173965702
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_0003II CIL_0003II_0002 CGP 2:173906459-174248698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066003 Sp3-002 protein_coding Mus_musculus 0 5371
ENSMUST00000102689 Sp3-001 protein_coding Mus_musculus 0 5241
ENSMUST00000133615 Sp3-003 processed_transcript Mus_musculus 0 5234
ENSMUST00000141372 Sp3-004 processed_transcript Mus_musculus 0 774
ENSMUST00000129565 Sp3-005 processed_transcript Mus_musculus 0 481

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