C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trans-acting transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066003 Sp3-002 ENSMUSG00000027109 10090 - 2:72936648-72980426 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000066003
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000066003 2.480±0.00 2.309±1.22 3.876±1.06 2.208±1.03 1.093±0.00 3.503±1.55 1.385±0.39 2.848±0.00 10.230±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0002 UCNEbase 2:72378722-73287933
CIL_0004JD CIL_0004JD_0002 CGP 2:72476159-72980446
CIL_0008JW CIL_0008JW_0002 VISTA 2:72839371-73441413
CIL_0008K1 CIL_0008K1_0002 VISTA 2:72842671-73444272
CIL_0008S8 CIL_0008S8_0002 VISTA 2:72879758-73480791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000987 IDA core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001503 IGI ossification
GO:0001701 IGI in utero embryonic development
GO:0001779 IMP natural killer cell differentiation
GO:0001829 IGI trophectodermal cell differentiation
GO:0001889 IGI liver development
GO:0001892 IGI embryonic placenta development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003690 IDA double-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0017053 IDA transcriptional repressor complex
GO:0030183 IMP B cell differentiation
GO:0030217 IMP T cell differentiation
GO:0030218 IMP erythrocyte differentiation
GO:0030219 IGI megakaryocyte differentiation
GO:0030224 IMP monocyte differentiation
GO:0030324 IGI lung development
GO:0030851 IMP granulocyte differentiation
GO:0043353 IGI enucleate erythrocyte differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048596 IGI embryonic camera-type eye morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0060136 IGI embryonic process involved in female pregnancy
GO:0060216 IGI definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310015 SP3-001 protein_coding Homo_sapiens 0 5238
ENST00000414049 SP3P-001 processed_pseudogene Homo_sapiens 0 2252
ENST00000416195 SP3-002 protein_coding Homo_sapiens 0 5371
ENST00000418194 SP3-003 protein_coding Homo_sapiens 0 5238
ENST00000462904 SP3-007 processed_transcript Homo_sapiens 0 640
ENST00000465379 SP3-004 retained_intron Homo_sapiens 0 2776
ENST00000483084 SP3-005 processed_transcript Homo_sapiens 0 278
ENST00000490182 SP3-008 processed_transcript Homo_sapiens 0 261

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