C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tryptophan hydroxylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417164 TPH1-002 ENSG00000129167 9606 - 11:18020991-18040762 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IE CIL_0001IE_0002 CGP 11:17788048-18042426
CIL_00041A CIL_00041A_0002 CGP 11:18017564-18106091

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0008152 IEA metabolic process
GO:0009072 IEA aromatic amino acid family metabolic process
GO:0016597 IEA amino acid binding
GO:0016714 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172386 Tph1-006 nonsense_mediated_decay Mus_musculus 0 1188
ENSMUST00000049298 Tph1-002 protein_coding Mus_musculus 0 771
ENSMUST00000107669 Tph1-001 protein_coding Mus_musculus 0 771
ENSMUST00000170251 Tph1-005 nonsense_mediated_decay Mus_musculus 0 455
ENSMUST00000168335 Tph1-003 protein_coding Mus_musculus 0 335
ENSMUST00000110264 Tph1-007 retained_intron Mus_musculus 0 322
ENSMUST00000170045 Tph1-008 retained_intron Mus_musculus 0 200
ENSMUST00000163468 Tph1-004 retained_intron Mus_musculus 9e-24 115

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