C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001IE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070986-ENSDARG00000029432 CGP 7955 25:8349905-8423475
GeneTranscriptPositionBiotype
ENSDARG00000029432 (tph1a)
tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a 		ENSDART00000041676 (tph1a-201) 8402884-8423475 protein_coding
ENSDART00000067159 (tph1a-202) 8402878-8423475 protein_coding
ENSDARG00000032959 (kcnc1b)
potassium voltage-gated channel, Shaw-related subfamily, member 1b 		ENSDART00000073919 (kcnc1b-201) 8326839-8359521 protein_coding
ENSDARG00000070986 (sergef)
secretion regulating guanine nucleotide exchange factor 		ENSDART00000104659 (sergef-201) 8349905-8401506 protein_coding
CIL_0001IE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129158-ENSG00000129167 CGP 9606 11:17788048-18042426
GeneTranscriptPositionBiotype
ENSG00000129158 (SERGEF)
secretion regulating guanine nucleotide exchange factor 		ENST00000265965 (SERGEF-001) 17788048-18013162 protein_coding
ENST00000524589 (SERGEF-020) 17788052-17863697 processed_transcript
ENST00000524716 (SERGEF-006) 18000524-18013012 nonsense_mediated_decay
ENST00000525168 (SERGEF-023) 17877847-17959623 processed_transcript
ENST00000525422 (SERGEF-002) 17788048-18013036 nonsense_mediated_decay
ENST00000525920 (SERGEF-014) 17788249-18004497 protein_coding
ENST00000527494 (SERGEF-011) 17788048-18012898 nonsense_mediated_decay
ENST00000528200 (SERGEF-003) 17788049-18013028 protein_coding
ENST00000528369 (SERGEF-017) 17788048-17939632 processed_transcript
ENST00000529151 (SERGEF-015) 17788155-18000804 protein_coding
ENST00000529440 (SERGEF-019) 17788052-17995835 processed_transcript
ENST00000529728 (SERGEF-004) 17959453-18012929 protein_coding
ENST00000530613 (SERGEF-012) 17988605-18012898 protein_coding
ENST00000530925 (SERGEF-008) 17992950-18012924 nonsense_mediated_decay
ENST00000530951 (SERGEF-013) 18007941-18010342 processed_transcript
ENST00000531299 (SERGEF-022) 17788048-17866864 processed_transcript
ENST00000531926 (SERGEF-021) 17788048-17874278 processed_transcript
ENST00000532212 (SERGEF-007) 17999546-18012928 processed_transcript
ENST00000532265 (SERGEF-005) 17846562-18012953 protein_coding
ENST00000532389 (SERGEF-009) 17988687-18012924 protein_coding
ENST00000532546 (SERGEF-018) 17788196-17995865 nonsense_mediated_decay
ENST00000533241 (SERGEF-016) 17846588-17988757 protein_coding
ENST00000533328 (SERGEF-010) 17992988-18012918 nonsense_mediated_decay
ENSG00000129167 (TPH1)
tryptophan hydroxylase 1 		ENST00000250018 (TPH1-001) 18017564-18041325 protein_coding
ENST00000417164 (TPH1-002) 18020991-18040762 nonsense_mediated_decay
ENST00000525406 (TPH1-003) 18021077-18023169 processed_transcript
ENST00000528338 (TPH1-004) 18029515-18042426 protein_coding
CIL_0001IE_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030839-ENSMUSG00000040046 CGP 10090 7:46443168-46672537
GeneTranscriptPositionBiotype
ENSMUSG00000030839 (Sergef)
secretion regulating guanine nucleotide exchange factor 		ENSMUST00000033127 (Sergef-001) 46443168-46639807 protein_coding
ENSMUST00000124962 (Sergef-005) 46443474-46614788 processed_transcript
ENSMUST00000125825 (Sergef-004) 46632660-46635947 retained_intron
ENSMUST00000135035 (Sergef-002) 46632682-46639631 protein_coding
ENSMUST00000137988 (Sergef-003) 46632696-46639580 processed_transcript
ENSMUST00000156147 (Sergef-006) 46443221-46603242 processed_transcript
ENSMUSG00000040046 (Tph1)
tryptophan hydroxylase 1 		ENSMUST00000049298 (Tph1-002) 46647161-46672537 protein_coding
ENSMUST00000107669 (Tph1-001) 46647130-46667377 protein_coding
ENSMUST00000110264 (Tph1-007) 46649741-46651419 retained_intron
ENSMUST00000163468 (Tph1-004) 46660020-46662315 retained_intron
ENSMUST00000168335 (Tph1-003) 46660338-46667343 protein_coding
ENSMUST00000170045 (Tph1-008) 46656862-46660668 retained_intron
ENSMUST00000170251 (Tph1-005) 46647426-46665301 nonsense_mediated_decay
ENSMUST00000172386 (Tph1-006) 46647426-46665288 nonsense_mediated_decay
ENSMUSG00000087492 (Gm15700)
predicted gene 15700 		ENSMUST00000139791 (Gm15700-001) 46561301-46577871 antisense
ENSMUSG00000094229 (Gm22969)
predicted gene, 22969 		ENSMUST00000179018 (Gm22969-201) 46450413-46450519 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001IE_0001ENSDARG00000029432ENSDART00000041676ENSDART00000067159ENSDARG00000032959ENSDART00000073919ENSDARG00000070986ENSDART00000104659CIL_0001IE_0002ENSG00000129158ENST00000265965ENST00000524589ENST00000524716ENST00000525168ENST00000525422ENST00000525920ENST00000527494ENST00000528200ENST00000528369ENST00000529151ENST00000529440ENST00000529728ENST00000530613ENST00000530925ENST00000530951ENST00000531299ENST00000531926ENST00000532212ENST00000532265ENST00000532389ENST00000532546ENST00000533241ENST00000533328ENSG00000129167ENST00000250018ENST00000417164ENST00000525406ENST00000528338CIL_0001IE_0003ENSMUSG00000030839ENSMUST00000033127ENSMUST00000124962ENSMUST00000125825ENSMUST00000135035ENSMUST00000137988ENSMUST00000156147ENSMUSG00000040046ENSMUST00000049298ENSMUST00000107669ENSMUST00000110264ENSMUST00000163468ENSMUST00000168335ENSMUST00000170045ENSMUST00000170251ENSMUST00000172386ENSMUSG00000087492ENSMUST00000139791ENSMUSG00000094229ENSMUST00000179018
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001IE_0001ENSDARG00000029432ENSDART00000041676ENSDART00000067159ENSDARG00000032959ENSDART00000073919ENSDARG00000070986ENSDART00000104659CIL_0001IE_0002ENSG00000129158ENST00000265965ENST00000525168ENST00000525422ENST00000525920ENST00000527494ENST00000528200ENST00000529151ENST00000529440ENST00000530613ENST00000531926ENST00000532389ENST00000533241ENSG00000129167ENST00000250018CIL_0001IE_0003ENSMUSG00000030839ENSMUST00000033127ENSMUST00000124962ENSMUST00000125825ENSMUST00000156147ENSMUSG00000040046ENSMUST00000049298ENSMUST00000107669ENSMUST00000168335ENSMUST00000170045ENSMUST00000170251ENSMUST00000172386ENSMUSG00000087492ENSMUST00000139791ENSMUSG00000094229ENSMUST00000179018
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029432 ENSDART00000041676 N/A N/A N/A 1.924±1.40 N/A N/A 0.203±0.19 1.272±0.04 0.148±0.00 N/A 0.114±0.00 N/A N/A N/A
ENSDART00000067159 N/A N/A N/A 0.096±0.05 N/A N/A 0.071±0.04 N/A 0.026±0.00 N/A 0.113±0.00 N/A N/A N/A
ENSDARG00000032959 ENSDART00000073919 N/A N/A N/A 9.599±2.87 N/A N/A 0.287±0.15 0.173±0.16 0.139±0.00 N/A 0.607±0.00 N/A N/A N/A
ENSDARG00000070986 ENSDART00000104659 N/A N/A N/A 0.851±0.38 N/A N/A 0.508±0.19 2.921±1.40 0.380±0.00 N/A 0.920±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129158 ENST00000265965 5.600±0.00 5.605±0.00 N/A 5.489±0.00 5.173±0.00 7.567±0.00 1.782±1.42 4.434±0.00 2.090±0.60 4.836±0.00 2.720±0.00 6.449±3.06 1.805±0.36 4.771±0.00
ENST00000524589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525168 N/A N/A N/A N/A N/A N/A 2.605±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000525422 N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A
ENST00000525920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.179±0.00 6.552±0.00 7.969±0.00 11.503±0.00
ENST00000527494 N/A N/A N/A 5.182±0.16 N/A N/A N/A 2.244±0.00 N/A N/A N/A N/A N/A N/A
ENST00000528200 3.408±0.00 N/A N/A 8.538±0.00 3.625±0.00 9.201±0.00 1.714±0.00 2.438±1.77 0.913±0.00 3.310±0.00 3.791±0.00 5.111±2.38 0.985±0.19 3.682±0.00
ENST00000528369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529151 N/A N/A N/A 6.481±0.36 N/A N/A N/A 4.571±0.00 4.534±0.00 N/A N/A 10.106±0.00 1.290±0.00 N/A
ENST00000529440 8.697±0.00 12.606±0.00 N/A N/A 10.103±0.00 N/A N/A N/A N/A 6.199±0.00 N/A 29.566±0.00 N/A 15.837±0.00
ENST00000529728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530613 N/A N/A N/A 7.817±0.00 N/A N/A N/A 0.486±0.00 N/A N/A N/A N/A 2.702±0.00 N/A
ENST00000530925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.528±0.00 N/A 2.727±0.00 N/A
ENST00000532212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532389 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.701±0.00 1.955±0.00 3.343±0.00 N/A N/A
ENST00000532546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533241 N/A N/A N/A N/A N/A N/A N/A N/A 4.185±0.00 6.547±0.00 N/A 3.800±0.00 N/A N/A
ENST00000533328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000129167 ENST00000250018 N/A N/A 0.190±0.00 N/A 0.444±0.00 2.511±0.00 N/A N/A N/A 0.193±0.00 N/A 0.527±0.00 N/A 0.441±0.00
ENST00000417164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030839 ENSMUST00000033127 3.264±1.37 7.316±1.23 2.926±0.47 10.163±2.76 3.104±1.06 4.342±0.86 1.680±0.29 6.626±0.70 2.812±0.56 4.393±0.32 1.209±0.18 4.887±1.40 2.417±0.94 N/A
ENSMUST00000124962 3.015±0.00 N/A N/A N/A 5.827±0.00 3.847±0.00 1.419±0.00 N/A 3.705±2.21 N/A N/A N/A 0.820±0.00 N/A
ENSMUST00000125825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.315±0.00 N/A N/A N/A
ENSMUST00000135035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156147 N/A 4.294±0.40 N/A 9.277±0.00 2.612±1.29 1.858±0.70 0.840±0.00 3.500±0.83 1.486±0.60 N/A 0.541±0.00 3.699±1.01 N/A 4.516±0.74
ENSMUSG00000040046 ENSMUST00000049298 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A 0.641±0.18 0.027±0.00 N/A N/A
ENSMUST00000107669 0.046±0.03 0.058±0.00 0.009±0.00 0.096±0.01 0.398±0.27 2.684±0.77 N/A 0.019±0.00 0.016±0.00 N/A 0.414±0.19 0.077±0.04 0.528±0.58 N/A
ENSMUST00000110264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168335 N/A N/A N/A N/A N/A N/A 0.120±0.10 N/A N/A 0.232±0.00 N/A 0.072±0.00 1.669±0.00 0.078±0.00
ENSMUST00000170045 N/A N/A N/A N/A 0.388±0.00 N/A 0.089±0.00 0.096±0.00 N/A N/A N/A 0.740±0.00 N/A 0.205±0.00
ENSMUST00000170251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00
ENSMUST00000172386 N/A N/A 0.043±0.01 N/A 0.063±0.00 N/A 0.045±0.00 N/A N/A N/A N/A 0.122±0.03 0.024±0.00 0.032±0.00
ENSMUSG00000087492 ENSMUST00000139791 N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A 0.022±0.00 N/A N/A 0.501±0.00 0.014±0.00 N/A
ENSMUSG00000094229 ENSMUST00000179018 N/A N/A N/A N/A N/A N/A N/A N/A 3.103±0.00 N/A N/A N/A N/A N/A

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