C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: presenilin associated, rhomboid-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417784 PARL-009 ENSG00000175193 9606 - 3:183829390-183844274 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastKidneyLiverMuscleOvaryPlacentaENST00000417784
Transcript ID Adrenal Bladder Breast Kidney Liver Muscle Ovary Placenta
ENST00000417784 12.565±0.00 2.594±0.00 4.693±0.00 8.910±0.00 4.089±0.00 4.832±0.00 9.059±0.00 7.401±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G0 CIL_0005G0_0001 CGP 3:183815876-183884933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048642 Parl-001 protein_coding Mus_musculus 0 601
ENSMUST00000136252 Parl-002 nonsense_mediated_decay Mus_musculus 0 601
ENSMUST00000120117 Gm13181-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000155832 Parl-007 retained_intron Mus_musculus 0 326
ENSMUST00000123070 Parl-003 retained_intron Mus_musculus 0 294
ENSMUST00000126001 Parl-008 retained_intron Mus_musculus 0 220
ENSMUST00000136700 Parl-005 processed_transcript Mus_musculus 4e-20 102
ENSMUST00000133153 Parl-009 nonsense_mediated_decay Mus_musculus 0.00000000004 73

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