C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp3 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418194 SP3-003 ENSG00000172845 9606 - 2:173908530-173964219 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000418194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000418194 11.447±0.00 5.760±0.00 2.593±0.00 3.727±1.16 4.734±0.00 10.994±3.39 3.791±0.38 4.413±1.40 7.720±6.41 6.640±1.92 1.724±0.00 8.449±5.24 2.836±2.05 3.491±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0004JD CIL_0004JD_0001 CGP 2:173354820-173965702
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_0003II CIL_0003II_0002 CGP 2:173906459-174248698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133615 Sp3-003 processed_transcript Mus_musculus 0 5555
ENSMUST00000102689 Sp3-001 protein_coding Mus_musculus 0 5419
ENSMUST00000066003 Sp3-002 protein_coding Mus_musculus 0 5238
ENSMUST00000141372 Sp3-004 processed_transcript Mus_musculus 0 774
ENSMUST00000129565 Sp3-005 processed_transcript Mus_musculus 0 481

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