C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase type IVA, member 1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420539 PTP4A1P1-001 ENSG00000231158 9606 + 2:158065545-158066059 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleTestisENST00000420539
Transcript ID Muscle Testis
ENST00000420539 0.056±0.00 0.038±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000753 CIL_000753_0001 CGP 2:157876702-158456753

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122008 Gm13363-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000120920 Gm15801-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000159764 Gm8783-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000075251 Gm5582-201 processed_pseudogene Mus_musculus 0 577
ENSMUST00000076587 Ptp4a1-005 protein_coding Mus_musculus 0 577
ENSMUST00000027232 Ptp4a1-001 protein_coding Mus_musculus 0 577
ENSMUST00000153681 Ptp4a1-003 retained_intron Mus_musculus 0 446
ENSMUST00000119219 Gm15026-001 processed_pseudogene Mus_musculus 0 379

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