C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: insulin-like growth factor 2 mRNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421047 IGF2BP2-201 ENSG00000073792 9606 - 3:185645501-185821131 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000421047
Transcript ID Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000421047 1.641±0.00 2.270±0.00 0.430±0.00 0.218±0.00 0.091±0.00 40.372±25.29 9.144±0.00 3.690±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0006RH CIL_0006RH_0001 CGP 3:185582496-185825056
CIL_0003YC CIL_0003YC_0002 CGP 3:185643739-185938136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IDA cytoskeleton
GO:0009653 TAS anatomical structure morphogenesis
GO:0010467 TAS gene expression
GO:0017148 ISS negative regulation of translation
GO:0042035 IC regulation of cytokine biosynthetic process
GO:0044822 IDA poly(A) RNA binding
GO:0045182 ISS translation regulator activity
GO:0048027 IDA mRNA 5'-UTR binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115379 Igf2bp2-004 protein_coding Mus_musculus 0 1934
ENSMUST00000134188 Igf2bp2-009 retained_intron Mus_musculus 0 1934
ENSMUST00000100052 Igf2bp2-001 protein_coding Mus_musculus 0 1934
ENSMUST00000129913 Igf2bp2-003 retained_intron Mus_musculus 0 1432
ENSMUST00000146885 Igf2bp2-006 retained_intron Mus_musculus 0 309
ENSMUST00000124318 Igf2bp2-007 retained_intron Mus_musculus 0 298
ENSMUST00000151087 Igf2bp2-008 processed_transcript Mus_musculus 0 193

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