C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: presenilin associated, rhomboid-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421484 PARL-004 ENSG00000175193 9606 - 3:183829509-183884908 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryENST00000421484
Transcript ID Brain Breast Ovary
ENST00000421484 1.427±0.00 2.613±0.00 1.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G0 CIL_0005G0_0001 CGP 3:183815876-183884933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0005739 IDA mitochondrion
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136252 Parl-002 nonsense_mediated_decay Mus_musculus 0 1426
ENSMUST00000133153 Parl-009 nonsense_mediated_decay Mus_musculus 0 874
ENSMUST00000048642 Parl-001 protein_coding Mus_musculus 0 776
ENSMUST00000120117 Gm13181-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000136700 Parl-005 processed_transcript Mus_musculus 0 486
ENSMUST00000123070 Parl-003 retained_intron Mus_musculus 0 462
ENSMUST00000126001 Parl-008 retained_intron Mus_musculus 0 396
ENSMUST00000152887 Parl-004 processed_transcript Mus_musculus 0 394
ENSMUST00000143648 Parl-006 retained_intron Mus_musculus 0 387
ENSMUST00000155832 Parl-007 retained_intron Mus_musculus 0 326
ENSMUST00000153275 Parl-010 retained_intron Mus_musculus 0 315
ENSMUST00000117482 Gm14994-001 processed_pseudogene Mus_musculus 1.4013e-45 187

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