C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421512 TBP-004 ENSG00000112592 9606 + 6:170554302-170566957 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverLungOvaryENST00000421512
Transcript ID Bladder Brain Heart Liver Lung Ovary
ENST00000421512 0.558±0.00 0.917±0.00 0.326±0.00 0.908±0.00 0.853±0.20 5.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018G CIL_00018G_0001 CGP 6:170535117-170572870
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006352 IEA DNA-templated transcription, initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117593 Tbp-004 protein_coding Mus_musculus 0 387
ENSMUST00000014911 Tbp-003 protein_coding Mus_musculus 0 387
ENSMUST00000118001 Tbp-002 protein_coding Mus_musculus 0 387
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 387
ENSMUST00000119879 Tbp-011 protein_coding Mus_musculus 0 387
ENSMUST00000147081 Tbp-006 protein_coding Mus_musculus 0 339
ENSMUST00000153480 Tbp-008 protein_coding Mus_musculus 9.99967e-42 174

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