C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36A, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120093 Rpl36a-ps3-001 ENSMUSG00000071141 10090 + 6:136488807-136489127 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverMusclePlacentaTestisENSMUST00000120093
Transcript ID Bladder Brain Breast Kidney Liver Muscle Placenta Testis
ENSMUST00000120093 0.208±0.15 4.031±5.46 0.361±0.00 0.229±0.00 8.265±21.12 0.627±0.48 0.150±0.09 0.241±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096F CIL_00096F_0002 VISTA 6:136167244-136769677
CIL_00082T CIL_00082T_0002 VISTA 6:136168119-136771874

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080919 rpl36a-001 protein_coding Danio_rerio 0 283
ENST00000298289 RPL36AL-001 protein_coding Homo_sapiens 0 449
ENST00000399253 RP3-507I15.1-001 processed_pseudogene Homo_sapiens 0 246
ENST00000418637 RP1-128O3.6-001 processed_pseudogene Homo_sapiens 0 198
ENST00000421785 RPL36AP10-001 processed_pseudogene Homo_sapiens 0 279
ENST00000437414 AC111155.1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000444514 RPL36AP15-001 processed_pseudogene Homo_sapiens 9e-28 126
ENST00000490372 RPL36AP21-001 processed_pseudogene Homo_sapiens 0 418
ENST00000493820 RPL36AP41-001 processed_pseudogene Homo_sapiens 0 326
ENST00000497944 RPL36AP45-001 processed_pseudogene Homo_sapiens 0 390
ENST00000605745 RP11-108K3.5-001 processed_pseudogene Homo_sapiens 3e-18 94

Loading