C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36A-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054544 Rpl36al-001 ENSMUSG00000049751 10090 - 12:69182741-69184083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054544 56.690±6.49 11.353±3.42 246.675±29.18 85.350±31.27 38.657±14.05 69.149±9.00 38.212±7.52 85.038±3.97 228.231±194.50 58.937±3.61 129.868±5.87 92.679±73.33 240.981±105.19 83.797±14.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Q6 CIL_0005Q6_0002 CGP 12:69168814-69184083
CIL_0005Q5 CIL_0005Q5_0002 CGP 12:69182731-69186770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080919 rpl36a-001 protein_coding Danio_rerio 0 294
ENST00000298289 RPL36AL-001 protein_coding Homo_sapiens 0 466
ENST00000399253 RP3-507I15.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000418637 RP1-128O3.6-001 processed_pseudogene Homo_sapiens 0 204
ENST00000421785 RPL36AP10-001 processed_pseudogene Homo_sapiens 0 285
ENST00000437414 AC111155.1-001 processed_pseudogene Homo_sapiens 0 379
ENST00000444514 RPL36AP15-001 processed_pseudogene Homo_sapiens 2e-29 132
ENST00000490372 RPL36AP21-001 processed_pseudogene Homo_sapiens 0 424
ENST00000493820 RPL36AP41-001 processed_pseudogene Homo_sapiens 0 331
ENST00000497944 RPL36AP45-001 processed_pseudogene Homo_sapiens 0 396
ENST00000605745 RP11-108K3.5-001 processed_pseudogene Homo_sapiens 3e-18 94

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