C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425244 CUX1-018 ENSG00000257923 9606 + 7:101816021-102283957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonLiverENST00000425244
Transcript ID Adipose Colon Liver
ENST00000425244 7.018±0.00 9.076±0.00 2.573±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FZ CIL_0002FZ_0002 CGP 7:101815904-102321711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 ISS RNA polymerase II regulatory region sequence-specific DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0007275 TAS multicellular organismal development
GO:0030173 IEA integral component of Golgi membrane
GO:0043565 IDA sequence-specific DNA binding
GO:0050775 ISS positive regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176216 Cux1-004 protein_coding Mus_musculus 0 1903
ENSMUST00000176745 Cux1-006 protein_coding Mus_musculus 0 1864
ENSMUST00000177297 Cux1-009 nonsense_mediated_decay Mus_musculus 0 1733
ENSMUST00000175998 Cux1-013 protein_coding Mus_musculus 0 1360
ENSMUST00000175918 Cux1-003 nonsense_mediated_decay Mus_musculus 0 1319
ENSMUST00000176172 Cux1-011 protein_coding Mus_musculus 0 1075
ENSMUST00000004097 Cux1-001 protein_coding Mus_musculus 0 1075
ENSMUST00000176778 Cux1-005 protein_coding Mus_musculus 0 1037
ENSMUST00000176486 Cux1-012 protein_coding Mus_musculus 0 1037
ENSMUST00000175975 Cux1-008 protein_coding Mus_musculus 0 1037
ENSMUST00000176423 Cux1-017 protein_coding Mus_musculus 0 532
ENSMUST00000176501 Cux1-007 retained_intron Mus_musculus 0 411
ENSMUST00000177305 Cux1-002 retained_intron Mus_musculus 0 270
ENSDART00000129464 cux2b-201 protein_coding Danio_rerio 0.000000006 68
ENSDART00000134378 cux2b-002 protein_coding Danio_rerio 0.000000006 68

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