C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and calponin homology (CH) domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425562 LRCH3-006 ENSG00000186001 9606 + 3:197791279-197884302 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLiverLungTestisENST00000425562
Transcript ID Adipose Breast Colon Heart Liver Lung Testis
ENST00000425562 1.094±0.00 2.157±0.00 1.581±0.00 2.546±0.00 0.935±0.00 1.846±0.00 4.202±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C7 CIL_0006C7_0001 CGP 3:197737179-197888436
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023491 Lrch3-001 protein_coding Mus_musculus 0 2455
ENSMUST00000135193 Lrch3-005 protein_coding Mus_musculus 0 2327
ENSMUST00000170201 Lrch3-012 protein_coding Mus_musculus 0 1897
ENSMUST00000156928 Lrch3-002 retained_intron Mus_musculus 0 1783
ENSMUST00000171118 Lrch3-011 protein_coding Mus_musculus 0 1565
ENSMUST00000170899 Lrch3-008 protein_coding Mus_musculus 0 1565
ENSMUST00000165616 Lrch3-010 protein_coding Mus_musculus 0 1027
ENSMUST00000142290 Lrch3-004 protein_coding Mus_musculus 0 645
ENSMUST00000165826 Lrch3-006 protein_coding Mus_musculus 0 540
ENSMUST00000164486 Lrch3-007 nonsense_mediated_decay Mus_musculus 0 470
ENSMUST00000133399 Lrch3-003 processed_transcript Mus_musculus 0 405
ENSMUST00000163428 Lrch3-009 protein_coding Mus_musculus 0 403

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