C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426382 RP11-516A11.1-001 ENSG00000228328 9606 - X:68070520-68071767 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000426382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000426382 0.166±0.00 0.047±0.00 0.165±0.00 0.111±0.04 0.413±0.00 0.054±0.00 0.042±0.02 0.059±0.00 0.067±0.01 0.656±0.00 0.041±0.00 0.070±0.05 0.028±0.01 0.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SR CIL_0001SR_0002 CGP X:67544032-68433913
CIL_0001SQ CIL_0001SQ_0002 CGP X:68042344-68537285

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091117 Gm5537-201 processed_pseudogene Mus_musculus 0 1568
ENSMUST00000081593 Pgk1-001 protein_coding Mus_musculus 0 1568
ENSMUST00000085735 Pgk1-rs7-201 protein_coding Mus_musculus 0 1568
ENSMUST00000135949 Pgk1-003 nonsense_mediated_decay Mus_musculus 0 907
ENSMUST00000133559 Pgk1-002 retained_intron Mus_musculus 0 436

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