C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gap junction protein, gamma 1, 45kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426548 GJC1-201 ENSG00000182963 9606 - 17:44798448-44830811 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartOvaryPlacentaTestisENST00000426548
Transcript ID Adipose Brain Colon Heart Ovary Placenta Testis
ENST00000426548 1.583±0.00 0.338±0.00 1.139±0.00 0.586±0.00 0.673±0.19 3.105±0.60 1.439±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0003CR CIL_0003CR_0001 CGP 17:44759031-44830816
CIL_0006U4 CIL_0006U4_0001 CGP 17:44798448-44850480

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001570 IEA vasculogenesis
GO:0005216 IEA ion channel activity
GO:0005243 IEA gap junction channel activity
GO:0005515 IEA protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005886 TAS plasma membrane
GO:0005921 TAS gap junction
GO:0005922 IEA connexon complex
GO:0006810 NAS transport
GO:0006936 TAS muscle contraction
GO:0007043 TAS cell-cell junction assembly
GO:0007267 IEA cell-cell signaling
GO:0007268 TAS synaptic transmission
GO:0007507 IEA heart development
GO:0007601 IEA visual perception
GO:0014704 TAS intercalated disc
GO:0016021 IEA integral component of membrane
GO:0016264 TAS gap junction assembly
GO:0034220 IEA ion transmembrane transport
GO:0048468 IEA cell development
GO:0048738 IEA cardiac muscle tissue development
GO:0055085 IEA transmembrane transport
GO:0061024 TAS membrane organization
GO:0086014 TAS atrial cardiac muscle cell action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092567 Gjc1-004 protein_coding Mus_musculus 0 2259
ENSMUST00000107075 Gjc1-002 protein_coding Mus_musculus 0 2254
ENSMUST00000068933 Gjc1-001 protein_coding Mus_musculus 0 2254
ENSMUST00000155089 Gjc1-003 retained_intron Mus_musculus 0 678
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00004 57

Loading