C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427112 USP40-017 ENSG00000085982 9606 - 2:233477392-233565590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungOvaryENST00000427112
Transcript ID Brain Breast Heart Liver Lung Ovary
ENST00000427112 0.670±0.13 0.569±0.00 0.661±0.00 2.204±0.00 1.559±0.00 2.103±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R9 CIL_0003R9_0001 CGP 2:233354507-233566782
CIL_0007HK CIL_0007HK_0001 CGP 2:233475520-233773310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187758 Usp40-001 protein_coding Mus_musculus 0 3506
ENSMUST00000188332 Usp40-002 nonsense_mediated_decay Mus_musculus 0 3214
ENSMUST00000040783 Usp40-003 protein_coding Mus_musculus 0 2486
ENSMUST00000186315 Usp40-004 retained_intron Mus_musculus 0 1626
ENSMUST00000187871 Usp40-006 retained_intron Mus_musculus 0 302
ENSMUST00000189586 Usp40-005 retained_intron Mus_musculus 0 296

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