C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class II, DQ beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427449 HLA-DQB2-004 ENSG00000232629 9606 - 6:32756388-32763466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaENST00000427449
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta
ENST00000427449 1.995±0.00 1.204±0.00 0.310±0.00 1.864±0.00 0.466±0.42 2.378±0.00 1.865±0.00 4.095±0.00 1.058±0.36 0.506±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PL CIL_0001PL_0009 CGP 6:32741342-32763534
CIL_0001PK CIL_0001PK_0003 CGP 6:32756098-32817048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006955 IEA immune response
GO:0016020 IEA membrane
GO:0019882 IEA antigen processing and presentation
GO:0042613 IEA MHC class II protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040828 H2-Ab1-001 protein_coding Mus_musculus 0 444
ENSMUST00000173103 H2-Ab1-003 retained_intron Mus_musculus 0 257

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