C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: rhomboid 5 homolog 1 (Drosophila) pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427504 RHBDF1P1-001 ENSG00000234123 9606 - 3:14572852-14574792 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderKidneyTestisENST00000427504
Transcript ID Adipose Bladder Kidney Testis
ENST00000427504 0.012±0.00 0.415±0.00 0.195±0.00 0.423±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000515 CIL_000515_0001 CGP 3:14489111-14672659

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146179 Rhbdf1-008 nonsense_mediated_decay Mus_musculus 0 1905
ENSMUST00000020524 Rhbdf1-006 protein_coding Mus_musculus 0 1905
ENSMUST00000143036 Rhbdf1-007 retained_intron Mus_musculus 0 804
ENSMUST00000143988 Rhbdf1-009 protein_coding Mus_musculus 0 608
ENSMUST00000137125 Rhbdf1-004 retained_intron Mus_musculus 0 555
ENSMUST00000103028 Rhbdf2-001 protein_coding Mus_musculus 0 518
ENSMUST00000103029 Rhbdf2-003 protein_coding Mus_musculus 0 518
ENSMUST00000142274 Rhbdf1-005 retained_intron Mus_musculus 0 497

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