C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid family 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146179 Rhbdf1-008 ENSMUSG00000020282 10090 - 11:32209587-32222280 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENSMUST00000146179
Transcript ID Bladder Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENSMUST00000146179 4.295±0.00 1.497±0.00 2.701±0.00 2.567±0.57 4.209±0.59 1.558±0.16 6.284±0.42 3.772±0.00 0.370±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053095 rhbdf1-001 protein_coding Danio_rerio 0 939
ENST00000262316 RHBDF1-001 protein_coding Homo_sapiens 0 2362
ENST00000417043 RHBDF1-005 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000419764 RHBDF1-012 protein_coding Homo_sapiens 1e-18 97
ENST00000427504 RHBDF1P1-001 processed_pseudogene Homo_sapiens 0 1905
ENST00000428730 RHBDF1-013 nonsense_mediated_decay Homo_sapiens 0 2948
ENST00000448893 RHBDF1-008 protein_coding Homo_sapiens 0 741
ENST00000450643 RHBDF1-010 protein_coding Homo_sapiens 0 590
ENST00000482904 RHBDF1-009 retained_intron Homo_sapiens 0 451
ENST00000486045 RHBDF1-007 retained_intron Homo_sapiens 0 401
ENST00000487201 RHBDF1-003 retained_intron Homo_sapiens 0 324
ENST00000493647 RHBDF1-006 retained_intron Homo_sapiens 0 261

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