C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid family 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020524 Rhbdf1-006 ENSMUSG00000020282 10090 - 11:32209585-32222300 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020524
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020524 34.785±8.07 21.634±1.47 27.815±4.00 10.267±1.15 35.177±3.72 23.540±1.87 10.892±2.52 17.893±1.98 3.029±0.77 36.909±3.42 4.527±1.37 34.216±9.72 11.085±5.49 1.222±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0004252 IEA serine-type endopeptidase activity
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006508 IEA proteolysis
GO:0008283 ISS cell proliferation
GO:0016021 IEA integral component of membrane
GO:0016477 ISS cell migration
GO:0042058 ISS regulation of epidermal growth factor receptor signaling pathway
GO:0050708 IEA regulation of protein secretion
GO:0050709 ISS negative regulation of protein secretion
GO:0061136 ISS regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053095 rhbdf1-001 protein_coding Danio_rerio 0 1098
ENST00000262316 RHBDF1-001 protein_coding Homo_sapiens 0 3090
ENST00000417043 RHBDF1-005 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000419764 RHBDF1-012 protein_coding Homo_sapiens 1e-18 97
ENST00000427504 RHBDF1P1-001 processed_pseudogene Homo_sapiens 0 1905
ENST00000428730 RHBDF1-013 nonsense_mediated_decay Homo_sapiens 0 2362
ENST00000448893 RHBDF1-008 protein_coding Homo_sapiens 0 741
ENST00000450643 RHBDF1-010 protein_coding Homo_sapiens 0 627
ENST00000482904 RHBDF1-009 retained_intron Homo_sapiens 0 451
ENST00000486045 RHBDF1-007 retained_intron Homo_sapiens 0 401
ENST00000487201 RHBDF1-003 retained_intron Homo_sapiens 0 505
ENST00000493647 RHBDF1-006 retained_intron Homo_sapiens 0 261

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