C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid family 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143036 Rhbdf1-007 ENSMUSG00000020282 10090 - 11:32209586-32217317 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000143036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000143036 5.051±0.00 4.809±1.15 5.277±0.24 0.936±0.72 6.826±1.09 4.083±0.58 1.314±0.22 2.398±0.55 0.430±0.10 6.653±0.34 0.790±0.09 7.460±2.77 1.247±0.58 0.190±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053095 rhbdf1-001 protein_coding Danio_rerio 0 488
ENST00000262316 RHBDF1-001 protein_coding Homo_sapiens 0 931
ENST00000417043 RHBDF1-005 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000419764 RHBDF1-012 protein_coding Homo_sapiens 1e-18 97
ENST00000427504 RHBDF1P1-001 processed_pseudogene Homo_sapiens 0 804
ENST00000428730 RHBDF1-013 nonsense_mediated_decay Homo_sapiens 0 931
ENST00000448893 RHBDF1-008 protein_coding Homo_sapiens 0 741
ENST00000450643 RHBDF1-010 protein_coding Homo_sapiens 0 627
ENST00000482904 RHBDF1-009 retained_intron Homo_sapiens 0 462
ENST00000486045 RHBDF1-007 retained_intron Homo_sapiens 0 237
ENST00000487201 RHBDF1-003 retained_intron Homo_sapiens 0 505
ENST00000493647 RHBDF1-006 retained_intron Homo_sapiens 0 281

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