C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427531 ESR1-008 ENSG00000091831 9606 + 6:151809107-152129619 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverMuscleOvaryENST00000427531
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Muscle Ovary
ENST00000427531 0.125±0.00 0.273±0.00 0.187±0.06 0.328±0.00 0.410±0.00 0.142±0.00 0.414±0.00 0.029±0.00 0.024±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EH CIL_0005EH_0001 CGP 6:151494030-152129619
CIL_0005EI CIL_0005EI_0001 CGP 6:151656691-152637801

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105589 Esr1-004 protein_coding Mus_musculus 0 1007
ENSMUST00000067086 Esr1-002 protein_coding Mus_musculus 0 1007
ENSMUST00000105590 Esr1-001 protein_coding Mus_musculus 0 1007
ENSMUST00000105588 Esr1-007 protein_coding Mus_musculus 0 843
ENSMUST00000138828 Esr1-003 retained_intron Mus_musculus 0 652
ENSMUST00000149195 Esr1-005 processed_transcript Mus_musculus 0 651
ENSMUST00000137012 Esr1-006 processed_transcript Mus_musculus 0 363
ENSMUST00000127934 Esr1-009 processed_transcript Mus_musculus 0 361

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