C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427947 USP40-008 ENSG00000085982 9606 - 2:233554325-233566710 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLungMuscleOvaryENST00000427947
Transcript ID Bladder Brain Breast Heart Lung Muscle Ovary
ENST00000427947 7.648±0.00 3.175±0.00 5.374±0.00 1.495±0.00 8.326±0.00 4.258±0.00 9.167±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R9 CIL_0003R9_0001 CGP 2:233354507-233566782
CIL_0007HK CIL_0007HK_0001 CGP 2:233475520-233773310

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186315 Usp40-004 retained_intron Mus_musculus 0 911
ENSMUST00000187758 Usp40-001 protein_coding Mus_musculus 0 911
ENSMUST00000040783 Usp40-003 protein_coding Mus_musculus 0 911
ENSMUST00000188332 Usp40-002 nonsense_mediated_decay Mus_musculus 0 584
ENSMUST00000189586 Usp40-005 retained_intron Mus_musculus 0 331
ENSMUST00000187871 Usp40-006 retained_intron Mus_musculus 0 296

Loading