C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167103 Nrxn3-003 ENSMUSG00000066392 10090 + 12:88723109-90332897 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverOvaryPlacentaTestisENSMUST00000167103
Transcript ID Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000167103 5.366±3.09 0.644±0.18 0.005±0.00 0.024±0.00 0.040±0.00 0.050±0.02 0.045±0.01 0.986±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U1 CIL_0004U1_0002 CGP 12:88360554-90334935
CIL_0008FT CIL_0008FT_0002 VISTA 12:88683898-89284926
CIL_0004U0 CIL_0004U0_0002 CGP 12:88722876-90738438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005246 IGI calcium channel regulator activity
GO:0007268 IGI synaptic transmission
GO:0007269 IGI neurotransmitter secretion
GO:0007416 IGI synapse assembly
GO:0042734 ISA presynaptic membrane
GO:0051965 IEA positive regulation of synapse assembly
GO:0090129 IEA positive regulation of synapse maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090934 nrxn3b-202 protein_coding Danio_rerio 0 1402
ENSDART00000127050 nrxn3b-203 protein_coding Danio_rerio 0 1402
ENSDART00000090646 nrxn3b-201 protein_coding Danio_rerio 0 1395
ENSDART00000154519 nrxn3a-002 nonsense_mediated_decay Danio_rerio 0 822
ENSDART00000088179 nrxn3a-202 protein_coding Danio_rerio 0 736
ENSDART00000064241 nrxn3a-201 protein_coding Danio_rerio 0 736
ENSDART00000153697 nrxn3a-003 protein_coding Danio_rerio 0 736
ENSDART00000149694 nrxn3b-001 protein_coding Danio_rerio 0 597
ENSDART00000141629 nrxn2a-001 protein_coding Danio_rerio 0 279
ENSDART00000087657 nrxn2a-201 protein_coding Danio_rerio 0 278
ENST00000265459 NRXN2-201 protein_coding Homo_sapiens 0 553
ENST00000281127 NRXN3-005 protein_coding Homo_sapiens 0 610
ENST00000335750 NRXN3-201 protein_coding Homo_sapiens 0 3157
ENST00000377551 NRXN2-001 protein_coding Homo_sapiens 0 553
ENST00000377559 NRXN2-002 protein_coding Homo_sapiens 0 852
ENST00000409571 NRXN2-015 protein_coding Homo_sapiens 0 553
ENST00000428277 NRXN3-006 protein_coding Homo_sapiens 0 1116
ENST00000486057 NRXN2-009 processed_transcript Homo_sapiens 0 226
ENST00000553363 NRXN3-010 protein_coding Homo_sapiens 0 623
ENST00000553631 NRXN3-009 protein_coding Homo_sapiens 0 411
ENST00000554719 NRXN3-001 protein_coding Homo_sapiens 0 3589
ENST00000554738 NRXN3-002 nonsense_mediated_decay Homo_sapiens 0 5797
ENST00000555073 NRXN3-012 processed_transcript Homo_sapiens 0 374
ENST00000555387 NRXN3-007 nonsense_mediated_decay Homo_sapiens 0 1895
ENST00000556003 NRXN3-013 processed_transcript Homo_sapiens 0 492
ENST00000556088 NRXN3-008 retained_intron Homo_sapiens 0 780
ENST00000556496 NRXN3-003 retained_intron Homo_sapiens 0 3299
ENST00000557081 NRXN3-011 protein_coding Homo_sapiens 0 608
ENST00000557594 NRXN3-004 protein_coding Homo_sapiens 0 1696

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