C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428334 AGAP1-201 ENSG00000157985 9606 + 2:235709178-236131800 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000428334
Transcript ID Adipose Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000428334 0.912±0.00 2.140±0.00 1.957±0.00 4.942±0.00 0.821±0.55 0.225±0.00 0.494±0.00 0.529±0.09 1.623±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R3 CIL_0003R3_0001 CGP 2:234951973-236131800
CIL_0003RE CIL_0003RE_0001 CGP 2:235494089-236168369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027521 Agap1-001 protein_coding Mus_musculus 0 3764
ENSMUST00000074945 Agap1-003 protein_coding Mus_musculus 0 2097
ENSMUST00000190096 Agap1-002 protein_coding Mus_musculus 0 1893

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