C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptic Ras GTPase activating protein 1 homolog (rat)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177932 Syngap1-202 ENSMUSG00000067629 10090 + 17:26941452-26970541 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverMuscleOvaryPlacentaTestisENSMUST00000177932
Transcript ID Adrenal Brain Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000177932 1.866±0.32 22.597±0.00 0.811±0.00 0.135±0.00 0.118±0.03 3.896±0.75 0.299±0.00 11.309±1.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643
CIL_0008HF CIL_0008HF_0002 VISTA 17:26563571-27166666
CIL_000253 CIL_000253_0002 CGP 17:26937973-26970645
CIL_000254 CIL_000254_0002 CGP 17:26941452-26976205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IDA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0007265 IDA Ras protein signal transduction
GO:0007389 IMP pattern specification process
GO:0008542 IMP visual learning
GO:0016020 IDA membrane
GO:0016358 IMP dendrite development
GO:0031235 IBA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0032320 IBA positive regulation of Ras GTPase activity
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0043113 IMP receptor clustering
GO:0043198 IDA dendritic shaft
GO:0043408 IMP regulation of MAPK cascade
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0046580 IBA negative regulation of Ras protein signal transduction
GO:0048169 IGI regulation of long-term neuronal synaptic plasticity
GO:0050771 IDA negative regulation of axonogenesis
GO:0050803 IMP regulation of synapse structure and activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293748 SYNGAP1-004 nonsense_mediated_decay Homo_sapiens 0 5326
ENST00000355818 SYNGAP1-006 protein_coding Homo_sapiens 0 1415
ENST00000395071 SYNGAP1-004 protein_coding Homo_sapiens 0 5409
ENST00000414753 SYNGAP1-003 protein_coding Homo_sapiens 0 4964
ENST00000418600 SYNGAP1-001 protein_coding Homo_sapiens 0 5452
ENST00000428982 SYNGAP1-003 protein_coding Homo_sapiens 0 4964
ENST00000449372 SYNGAP1-009 protein_coding Homo_sapiens 0 3314
ENST00000455687 SYNGAP1-001 protein_coding Homo_sapiens 0 5452
ENST00000461459 SYNGAP1-002 processed_transcript Homo_sapiens 0 2420
ENST00000470232 SYNGAP1-008 retained_intron Homo_sapiens 0 246
ENST00000479510 SYNGAP1-002 retained_intron Homo_sapiens 0 2420
ENST00000481000 SYNGAP1-008 retained_intron Homo_sapiens 0 246
ENST00000484671 SYNGAP1-007 processed_transcript Homo_sapiens 0 307
ENST00000486399 SYNGAP1-007 protein_coding Homo_sapiens 0 307
ENST00000490978 SYNGAP1-005 processed_transcript Homo_sapiens 0 361
ENST00000495633 SYNGAP1-005 processed_transcript Homo_sapiens 0 361

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