C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptic Ras GTPase activating protein 1 homolog (rat)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081285 Syngap1-201 ENSMUSG00000067629 10090 + 17:26941452-26970645 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryTestisENSMUST00000081285
Transcript ID Brain Muscle Ovary Testis
ENSMUST00000081285 17.813±1.27 0.132±0.00 3.359±0.00 4.795±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643
CIL_0008HF CIL_0008HF_0002 VISTA 17:26563571-27166666
CIL_000253 CIL_000253_0002 CGP 17:26937973-26970645
CIL_000254 CIL_000254_0002 CGP 17:26941452-26976205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IDA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0007265 IDA Ras protein signal transduction
GO:0007389 IMP pattern specification process
GO:0008542 IMP visual learning
GO:0016020 IDA membrane
GO:0016358 IMP dendrite development
GO:0017124 IEA SH3 domain binding
GO:0030054 IEA cell junction
GO:0031235 IBA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0032320 IBA positive regulation of Ras GTPase activity
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0043113 IMP receptor clustering
GO:0043198 IDA dendritic shaft
GO:0043408 IMP regulation of MAPK cascade
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0045202 IEA synapse
GO:0046580 ISS negative regulation of Ras protein signal transduction
GO:0048167 ISS regulation of synaptic plasticity
GO:0048169 IGI regulation of long-term neuronal synaptic plasticity
GO:0050771 IDA negative regulation of axonogenesis
GO:0050803 IMP regulation of synapse structure and activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293748 SYNGAP1-004 nonsense_mediated_decay Homo_sapiens 0 4922
ENST00000355818 SYNGAP1-006 protein_coding Homo_sapiens 0 1415
ENST00000395071 SYNGAP1-004 protein_coding Homo_sapiens 0 4922
ENST00000414753 SYNGAP1-003 protein_coding Homo_sapiens 0 5446
ENST00000418600 SYNGAP1-001 protein_coding Homo_sapiens 0 5199
ENST00000428982 SYNGAP1-003 protein_coding Homo_sapiens 0 5446
ENST00000449372 SYNGAP1-009 protein_coding Homo_sapiens 0 2826
ENST00000455687 SYNGAP1-001 protein_coding Homo_sapiens 0 5199
ENST00000461459 SYNGAP1-002 processed_transcript Homo_sapiens 0 1932
ENST00000470232 SYNGAP1-008 retained_intron Homo_sapiens 0 246
ENST00000479510 SYNGAP1-002 retained_intron Homo_sapiens 0 1932
ENST00000481000 SYNGAP1-008 retained_intron Homo_sapiens 0 246
ENST00000484671 SYNGAP1-007 processed_transcript Homo_sapiens 0 307
ENST00000486399 SYNGAP1-007 protein_coding Homo_sapiens 0 307
ENST00000490978 SYNGAP1-005 processed_transcript Homo_sapiens 0 361
ENST00000495633 SYNGAP1-005 processed_transcript Homo_sapiens 0 361

Loading