C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: predicted gene 16134
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161714 Gm16134-001 ENSMUSG00000089868 10090 - 13:63446930-63447265 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000161714
Transcript ID Brain
ENSMUST00000161714 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J5 CIL_0002J5_0002 CGP 13:63014934-63497278
CIL_00086R CIL_00086R_0002 VISTA 13:63254160-63855734
CIL_0008KR CIL_0008KR_0002 VISTA 13:63268917-63869745
CIL_0002J8 CIL_0002J8_0002 CGP 13:63304709-63565520

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329092 RPL35A-005 processed_transcript Homo_sapiens 1e-39 167
ENST00000402490 RP3-329A5.1-001 unprocessed_pseudogene Homo_sapiens 0 209
ENST00000429437 RPL35A-007 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000439255 RPL35A-008 nonsense_mediated_decay Homo_sapiens 8.99998e-41 171
ENST00000442341 RPL35A-006 protein_coding Homo_sapiens 0 351
ENST00000448864 RPL35A-002 protein_coding Homo_sapiens 0 363
ENST00000464167 RPL35A-001 protein_coding Homo_sapiens 0 363
ENST00000469688 RPL35AP32-001 processed_pseudogene Homo_sapiens 0 272
ENST00000474640 RPL35A-009 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000485439 RPL35A-004 retained_intron Homo_sapiens 0 359

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