C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chitinase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429789 CHID1-003 ENSG00000177830 9606 - 11:869762-910835 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000429789
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000429789 8.368±0.00 3.847±2.52 6.633±0.00 4.697±4.11 6.638±0.00 9.056±0.00 8.653±0.00 4.783±3.56 7.834±6.02 18.180±1.09 12.338±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ER CIL_0003ER_0001 CGP 11:842808-915058
CIL_0003EW CIL_0003EW_0001 CGP 11:867860-1012245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004553 IEA hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 IEA chitinase activity
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0005802 IDA trans-Golgi network
GO:0005975 IEA carbohydrate metabolic process
GO:0006032 IEA chitin catabolic process
GO:0016020 IDA membrane
GO:0045087 IEA innate immune response
GO:0070062 IDA extracellular vesicular exosome
GO:0070492 IPI oligosaccharide binding
GO:1900016 IDA negative regulation of cytokine production involved in inflammatory response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026586 Chid1-201 protein_coding Mus_musculus 0 765
ENSMUST00000166082 Chid1-202 protein_coding Mus_musculus 0 765
ENSMUST00000153191 Chid1-001 protein_coding Mus_musculus 0 763
ENSMUST00000118694 Chid1-002 protein_coding Mus_musculus 0 758
ENSMUST00000143561 Chid1-007 protein_coding Mus_musculus 0 743
ENSMUST00000064642 Chid1-005 nonsense_mediated_decay Mus_musculus 0 723
ENSMUST00000147610 Chid1-004 retained_intron Mus_musculus 0 699
ENSMUST00000133359 Chid1-003 retained_intron Mus_musculus 8e-40 169

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