C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433398 RPL35P5-001 ENSG00000225573 9606 - 7:66606738-66607107 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000433398
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000433398 0.237±0.00 0.131±0.00 0.195±0.00 0.213±0.00 0.347±0.00 0.319±0.00 0.138±0.00 0.217±0.02 0.465±0.00 0.181±0.01 1.597±1.50 1.916±1.49 1.693±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024I CIL_00024I_0001 CGP 7:66205199-66811187

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102782 Gm2000-001 protein_coding Mus_musculus 0 425
ENSMUST00000080861 Rpl35-001 protein_coding Mus_musculus 0 420
ENSMUST00000152441 Rpl35-003 processed_transcript Mus_musculus 0 409
ENSMUST00000165229 Gm10269-201 protein_coding Mus_musculus 0 407
ENSMUST00000118982 Gm4342-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000092020 Gm8444-201 protein_coding Mus_musculus 0 346
ENSMUST00000117147 Gm12460-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000118070 Rpl35-ps1-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000119868 Gm13717-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000134694 Itgam-010 protein_coding Mus_musculus 0 270
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 0 270
ENSMUST00000120817 Gm7212-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000117995 Gm12225-001 processed_pseudogene Mus_musculus 4e-38 161
ENSMUST00000039535 Wdr38-003 nonsense_mediated_decay Mus_musculus 1e-22 110

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